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PDBsum entry 1yda

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Cleft analysis for: 1yda PDB id
1yda
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 1598.91 1.65 60.19 8 10.37 2 11.87 1 4 5 5 2 4 7 0  
2 970.31 0.00 71.58 1 9.54 3 6.99 8 5 4 5 10 4 2 0 AZM 264[A] (13 atoms)
3 1136.11 0.00 64.00 6 8.23 4 8.11 3 6 2 7 2 2 7 0  
4 831.52 0.00 65.46 4 7.89 5 8.07 4 5 4 6 6 1 2 0  
5 621.84 0.00 51.51 10 6.26 8 8.57 2 2 2 2 3 0 3 0  
6 432.42 0.00 65.26 5 7.58 7 7.32 6 4 1 2 2 1 4 0  
7 357.33 0.00 66.67 3 7.63 6 7.06 7 1 2 5 1 2 1 0  
8 381.80 0.00 57.22 9 4.01 10 7.83 5 2 0 1 3 3 0 0  
9 322.73 0.00 70.03 2 13.01 1 0.00 10 3 2 0 3 0 0 0  
10 316.41 0.00 62.82 7 4.70 9 6.75 9 1 3 2 3 2 2 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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