PDBsum entry 1ybo Go to PDB code:  Tunnel analysis for: 1ybo calculated with MOLE 2.0 PDB id 1ybo Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.74 2.89 16.2 0.76 0.40 1.8 80 0 0 3 2 3 0 0   2 1.64 2.96 16.4 -1.13 -0.08 19.6 81 2 1 1 4 1 1 0   3 1.62 2.96 18.8 -1.06 -0.10 18.2 77 2 2 1 3 1 1 0   4 1.52 1.53 19.2 -1.62 -0.29 18.9 79 2 1 2 2 1 2 0   5 1.08 1.86 17.2 1.59 0.32 1.9 80 0 0 1 5 2 0 0   6 1.12 2.55 20.5 2.29 0.81 6.2 86 1 0 1 7 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.