PDBsum entry 1yae Go to PDB code:  Pore analysis for: 1yae calculated with MOLE 2.0 PDB id 1yae Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   11 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.88 2.11 40.3 -1.52 -0.48 15.2 86 4 4 5 2 2 0 0  NAG 1201 B 2 1.88 2.10 45.2 -1.29 -0.48 12.8 92 3 3 6 3 1 0 0  NAG 1201 B 3 2.12 2.74 49.1 -1.25 -0.55 19.3 79 4 7 4 2 0 1 0   4 2.68 2.80 49.1 -1.48 -0.41 24.1 80 5 6 2 4 2 0 0  DOQ 1503 E 5 3.63 4.11 59.0 -2.26 -0.49 23.9 85 9 3 9 3 1 0 0   6 2.31 3.61 91.6 -2.79 -0.53 35.5 79 11 10 3 3 2 2 0   7 2.14 2.74 96.4 -2.70 -0.58 32.7 80 11 11 5 3 2 2 0   8 1.63 1.64 158.7 -1.52 -0.39 18.5 84 9 10 7 7 3 3 0  NAG 1201 B 9 2.54 3.05 163.8 -2.31 -0.56 31.3 81 20 20 13 7 3 1 0   10 0.95 1.07 181.9 -1.59 -0.35 19.5 84 12 9 7 10 3 4 0  NAG 1201 B 11 1.55 1.61 177.9 -1.51 -0.43 17.0 85 10 10 8 8 3 3 0  NAG 1201 B 12 1.72 1.90 236.3 -2.19 -0.58 28.1 81 24 27 16 10 5 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.