PDBsum entry 1ya7 Go to PDB code:  Pore analysis for: 1ya7 calculated with MOLE 2.0 PDB id 1ya7 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   22 pores, coloured by radius 31 pores, coloured by radius 31 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.80 1.81 29.2 -1.26 -0.64 18.6 84 5 2 1 2 0 0 0   2 1.43 1.56 46.9 -2.55 -0.53 30.2 81 7 5 4 2 1 0 0  SO4 3003 D 3 1.69 1.69 60.6 -1.92 -0.34 29.0 79 10 8 2 3 3 0 0   4 1.74 1.82 62.5 -2.00 -0.36 30.4 78 12 8 2 2 3 0 0   5 1.79 2.63 71.8 -0.24 -0.27 10.9 86 2 5 5 8 1 1 0  SO4 3011 I SO4 3012 J 6 1.72 1.76 73.1 0.34 -0.13 8.7 90 3 4 3 11 0 0 0  SO4 3010 M SO4 3009 N 7 1.75 1.82 76.5 -1.81 -0.35 28.4 80 12 9 3 3 3 0 0   8 1.52 3.00 80.7 -2.08 -0.44 29.0 86 12 9 7 5 1 0 0  SO4 3015 H 9 1.77 1.82 83.6 -0.08 -0.32 9.6 89 4 6 5 9 0 0 0  SO4 3011 I SO4 3012 J 10 1.62 1.74 83.1 -1.83 -0.56 25.4 88 11 9 8 3 0 0 0   11 1.49 2.05 100.6 -2.02 -0.40 27.3 83 16 10 6 5 4 0 0   12 1.51 2.74 101.5 -1.89 -0.39 26.4 83 17 10 7 5 4 0 0  SO4 3015 H 13 1.57 1.72 103.6 -1.58 -0.29 25.1 82 13 8 5 8 4 0 0   14 1.89 2.72 107.9 -1.59 -0.47 23.4 86 9 11 7 6 1 1 0   15 1.52 1.99 110.3 -2.32 -0.57 29.5 84 16 10 6 3 1 0 0   16 1.50 2.05 115.9 -1.80 -0.49 22.1 91 12 6 14 7 1 0 0   17 1.56 2.83 129.0 -2.22 -0.47 28.6 84 19 12 8 7 3 0 0  SO4 3017 J 18 1.78 2.16 133.9 -1.47 -0.40 22.1 84 14 12 7 8 4 1 0   19 1.51 1.69 148.5 -1.78 -0.46 21.6 85 14 10 12 8 2 0 0  SO4 3006 G 20 1.47 1.49 159.1 -1.36 -0.21 14.5 81 8 4 11 12 7 0 0  SO4 3006 G SO4 3020 M 21 1.47 2.05 164.4 -1.77 -0.50 25.5 89 15 11 14 8 1 0 0   22 1.69 2.76 171.6 -2.58 -0.71 30.4 87 22 18 14 3 0 0 0  SO4 3017 J 23 1.71 1.93 174.9 -1.78 -0.40 23.3 83 21 14 11 10 5 0 0  SO4 3006 G 24 1.50 3.57 178.1 -1.40 -0.26 16.9 85 10 8 14 11 5 0 0  SO4 3020 M 25 1.59 3.04 185.5 -2.32 -0.60 28.3 87 22 15 13 5 1 0 0  SO4 3017 J 26 1.59 2.85 204.5 -1.47 -0.26 18.9 82 17 12 13 13 8 0 0  SO4 3020 M 27 1.60 2.84 208.2 -1.49 -0.33 18.3 85 14 10 15 11 5 0 0  SO4 3020 M 28 1.89 2.28 232.1 -1.95 -0.63 23.9 86 27 20 16 7 1 1 0  SO4 3004 E 29 1.72 2.48 223.5 -0.85 -0.34 16.5 85 12 12 13 16 3 1 0  SO4 3011 I SO4 3012 J SO4 3013 K 30 1.61 1.77 247.7 -2.08 -0.52 28.6 88 26 19 18 10 2 0 0  SO4 3015 H 31 1.52 2.82 42.7 -2.26 -0.35 27.5 81 5 3 4 6 1 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.