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PDBsum entry 1y7a

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 1y7a calculated with MOLE 2.0 PDB id
1y7a
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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16 tunnels, coloured by tunnel radius 15 tunnels, coloured by tunnel radius 15 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.42 11.8 -0.78 -0.27 7.0 84 0 1 1 3 1 1 0  
2 1.44 13.9 -0.65 -0.28 5.9 88 0 1 1 4 1 1 0  
3 1.42 19.0 -1.51 -0.44 13.6 84 1 2 3 2 1 1 0  
4 1.62 8.7 0.21 0.09 8.2 76 1 0 2 3 0 2 0  
5 1.56 7.4 -0.42 -0.33 6.0 73 0 1 0 2 1 0 0  
6 2.32 5.4 -1.18 -0.21 18.0 80 1 2 0 2 1 0 0  
7 2.12 6.1 -0.59 -0.12 12.9 80 1 2 0 2 1 0 0  
8 1.45 7.0 -2.50 -0.74 15.6 86 1 1 2 0 0 0 0  
9 2.38 5.2 -0.86 -0.23 15.1 80 1 2 0 2 1 0 0  
10 1.45 8.3 -0.17 -0.45 3.8 64 0 1 1 1 1 1 0  
11 1.46 7.0 0.15 -0.03 13.2 81 1 0 1 4 0 0 0  
12 1.50 7.4 -0.35 -0.32 4.1 68 1 0 0 1 1 1 0  
13 1.89 12.0 -1.87 -0.54 13.8 77 0 2 2 1 0 1 0  
14 1.51 9.2 -0.60 -0.33 10.5 78 1 0 1 2 0 2 0  
15 2.04 3.4 -1.31 -0.14 16.6 68 1 1 0 1 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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