spacer
spacer

PDBsum entry 1xyb

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 1xyb calculated with MOLE 2.0 PDB id
1xyb
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
13 tunnels, coloured by tunnel radius 11 tunnels, coloured by tunnel radius 11 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.47 44.5 -0.01 0.29 9.7 73 2 4 2 7 7 2 0  960 GLO B
2 1.28 5.3 -1.55 -0.52 12.6 86 1 1 1 2 0 0 0  
3 1.33 12.5 0.66 0.04 9.4 79 1 1 1 4 1 1 0  
4 1.36 12.6 0.36 -0.12 8.9 79 1 1 1 4 1 1 0  
5 2.12 10.8 -2.45 -0.54 31.6 70 2 3 0 0 2 0 0  
6 2.04 12.4 -0.65 -0.14 22.9 71 2 1 0 3 1 0 0  
7 2.16 12.2 -0.39 -0.08 20.8 71 2 1 0 3 1 0 0  
8 1.94 8.8 -0.43 -0.36 21.1 84 0 2 0 2 0 0 0  
9 2.00 10.7 -0.22 -0.29 18.6 79 0 2 0 2 1 0 0  
10 2.28 6.1 -1.38 -0.33 17.4 92 3 0 1 2 0 0 0  
11 1.78 6.4 -0.20 -0.45 16.7 93 0 1 0 3 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer