spacer
spacer

PDBsum entry 1xpr

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 1xpr calculated with MOLE 2.0 PDB id
1xpr
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
22 pores, coloured by radius 25 pores, coloured by radius 25 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.95 2.95 27.4 -2.17 -0.52 21.8 85 4 1 2 2 0 1 0  
2 1.22 1.31 67.4 0.68 0.37 13.1 77 5 2 1 10 2 1 0  AGS 1600 A
3 1.10 1.67 86.0 -0.74 -0.11 18.4 73 5 2 1 6 2 2 0  
4 1.63 1.79 107.2 -1.51 -0.38 21.7 82 7 7 7 6 2 1 0  AGS 1600 A
5 1.69 1.77 112.3 -1.03 -0.33 16.6 80 10 4 3 9 3 3 0  AGS 4600 D MG 4601 D FB 4701 D
6 1.60 2.34 118.7 -1.61 -0.43 25.0 82 15 9 3 10 2 1 0  AGS 3600 C MG 3601 C FB 3701 C
7 1.69 1.80 130.5 -1.69 -0.45 22.5 81 17 7 6 7 3 3 0  AGS 4600 D MG 4601 D FB 4701 D
8 1.83 1.98 135.6 -1.73 -0.43 21.2 83 11 6 8 8 2 3 0  
9 1.59 2.28 139.3 -1.28 -0.36 21.7 81 15 9 1 11 3 2 0  AGS 4600 D MG 4601 D FB 4701 D
10 1.83 1.91 157.8 -1.92 -0.44 22.3 83 13 8 11 11 1 5 0  C 2 K C 2 L
11 1.83 1.92 163.3 -1.85 -0.43 22.4 83 16 10 11 13 1 4 0  C 2 K C 2 L
12 1.95 2.66 168.3 -1.45 -0.46 18.2 80 12 13 9 12 4 1 0  AGS 3600 C C 2 H
13 1.19 1.37 182.0 -1.96 -0.45 25.2 80 14 12 8 7 3 2 0  AGS 2600 B
14 2.20 2.66 181.0 -1.71 -0.43 17.3 85 11 7 13 13 2 5 0  C 2 K C 2 L
15 1.31 1.56 187.1 -1.23 -0.19 21.6 80 11 11 5 13 5 2 0  AGS 2600 B
16 2.21 2.75 186.5 -1.67 -0.45 17.1 85 14 8 13 15 2 4 0  C 2 K C 2 L
17 1.34 1.55 205.6 -1.30 -0.33 19.6 87 8 13 9 11 3 2 0  
18 1.67 1.94 209.7 -1.35 -0.36 20.0 79 20 12 8 14 5 4 0  AGS 3600 C AGS 4600 D MG 4601 D FB 4701 D C 2 H
19 1.75 1.82 233.0 -1.76 -0.42 22.3 81 20 14 13 13 4 4 0  AGS 3600 C C 2 H
20 1.23 1.34 233.1 -1.73 -0.52 21.5 82 17 16 12 12 2 2 0  AGS 3600 C C 2 M
21 1.23 1.34 240.4 -1.74 -0.54 19.8 83 18 17 14 13 3 3 0  C 2 H C 2 M
22 1.31 1.35 252.0 -1.12 -0.30 18.0 82 16 15 9 18 4 2 0  AGS 3600 C C 2 M
23 1.38 1.51 259.3 -1.22 -0.34 17.1 82 18 16 11 19 6 3 0  C 2 H C 2 M
24 1.22 1.34 281.8 -1.59 -0.46 20.2 82 25 16 13 15 4 6 0  AGS 4600 D MG 4601 D FB 4701 D C 2 H C 2 M
25 1.21 1.33 305.1 -1.89 -0.50 22.3 83 27 18 18 14 4 6 0  C 2 H C 2 M

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer