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PDBsum entry 1xhz

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Top Page protein dna_rna ligands Protein-protein interface(s) pores links
Pore analysis for: 1xhz calculated with MOLE 2.0 PDB id
1xhz
Pores calculated on whole structure Pores calculated excluding ligands

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14 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.47 2.85 40.4 -1.77 -0.32 16.9 84 6 1 5 4 2 0 0  
2 2.58 4.45 40.8 -1.58 -0.13 25.7 88 7 4 4 4 1 0 0  
3 3.00 3.08 47.8 -2.20 -0.52 30.0 79 9 6 3 3 1 1 0  
4 2.47 2.85 50.0 -2.17 -0.35 21.7 78 7 6 4 3 4 1 0  
5 1.94 2.62 55.9 -2.69 -0.51 37.0 78 9 6 0 1 1 0 0  DT 1 H DT 2 H
6 1.18 1.48 58.9 -1.41 -0.30 27.6 82 8 7 0 7 1 1 0  DT 4 F DT 5 F
7 3.07 3.08 71.0 -2.40 -0.37 30.5 76 11 7 2 2 4 1 0  DT 2 G DT 3 G
8 1.19 1.48 76.1 -0.72 -0.31 16.2 85 7 5 3 9 0 1 0  DT 4 F DT 5 F
9 2.37 4.67 105.3 -2.26 -0.53 27.4 81 15 9 4 3 3 2 0  DT 2 G DT 3 G
10 2.99 5.10 105.3 -2.37 -0.27 29.8 74 15 9 2 4 6 1 0  DT 1 H DT 2 H DT 3 H
11 2.53 2.79 121.5 -2.67 -0.54 36.9 79 17 12 0 3 3 1 0  
12 2.40 4.67 123.3 -2.25 -0.46 27.8 79 17 6 3 4 4 1 0  DT 2 G
13 1.93 2.01 142.6 -2.09 -0.28 27.6 77 18 7 5 4 6 1 0  DT 2 G DT 3 G DT 2 H
14 2.94 5.19 141.7 -2.36 -0.32 29.3 75 20 12 4 4 7 2 0  DT 2 G DT 3 G DT 1 H DT 2 H DT 3 H

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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