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PDBsum entry 1x9s

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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 1x9s calculated with MOLE 2.0 PDB id
1x9s
Pores calculated on whole structure Pores calculated excluding ligands

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7 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.05 3.54 27.0 -2.25 -0.04 33.1 78 8 2 0 2 1 0 0  
2 2.36 2.54 34.8 -0.48 -0.23 17.2 80 2 4 3 4 2 0 0  DG 12 P DG 13 P
3 1.84 1.84 37.0 -2.29 -0.55 30.8 71 5 2 0 2 0 0 0  DG 13 P DT 14 P DA 15 P DC 9 T DA 10 T DC 15 T
4 1.97 2.17 38.1 -2.06 -0.53 28.1 70 5 2 0 2 0 1 0  DG 13 P DT 14 P DA 15 P DG 16 P DT 17 P DC 9 T DA
10 T
5 1.72 1.73 76.4 -1.10 -0.58 14.3 77 6 2 1 3 1 2 0  DG 16 P DT 17 P DT 19 P DG 20 P DA 21 P 2DT 22 P
DC 11 T DT 12 T DA 13 T DC 14 T DC 15 T
6 1.90 1.90 76.1 -0.71 -0.27 12.7 82 6 1 1 4 3 1 0  DA 15 P DT 17 P DA 21 P 2DT 22 P DA 5 T DT 6 T
7 1.20 1.42 158.6 -1.57 -0.20 22.0 78 20 5 5 11 4 2 0  DG 13 P DT 14 P DA 15 P DG 16 P DT 17 P DA 5 T DT
6 T DC 9 T DA 10 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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