spacer
spacer

PDBsum entry 1wkp

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 1wkp calculated with MOLE 2.0 PDB id
1wkp
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
4 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.20 1.20 25.3 -1.38 -0.61 20.0 83 4 2 0 4 0 0 0  SO4 1002 B
2 1.46 1.52 19.5 -2.16 -0.52 19.1 87 2 1 2 1 1 0 0  
3 1.44 1.50 24.6 -2.03 -0.42 19.0 83 3 1 3 1 2 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer