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PDBsum entry 1wdd

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 1wdd calculated with MOLE 2.0 PDB id
1wdd
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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13 tunnels, coloured by tunnel radius 14 tunnels, coloured by tunnel radius 14 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.29 26.8 -2.29 -0.43 17.4 81 3 3 4 2 2 0 0  
2 1.41 16.1 0.84 0.46 9.7 69 1 3 0 3 4 0 0  3006 GOL A
3 1.66 18.8 -0.78 -0.40 17.1 85 2 1 0 3 1 0 0  3004 GOL A,3010 GOL A,3012 GOL A,3017 GOL A
4 1.41 23.1 -0.47 -0.33 12.3 77 2 3 0 2 4 0 0  3004 GOL A,3006 GOL A,3010 GOL A
5 1.41 37.5 -0.22 -0.04 11.4 75 1 3 0 6 5 0 0  3004 GOL A,3006 GOL A,3010 GOL A,3012 GOL A,3017
GOL A
6 1.38 13.5 0.40 0.19 8.7 75 1 1 0 4 1 0 0  
7 1.29 17.7 -0.30 -0.42 7.7 83 1 1 0 1 2 0 0  
8 1.43 10.9 0.03 0.25 11.6 71 1 1 0 3 1 0 0  
9 1.94 4.3 1.50 0.47 8.0 79 0 2 1 2 0 0 2  
10 1.87 4.1 -0.20 0.02 11.4 64 1 1 0 2 1 0 0  
11 1.83 5.2 -0.14 -0.04 10.0 64 1 1 0 2 1 0 0  
12 1.83 18.0 -0.80 -0.26 16.5 63 1 1 1 3 2 0 0  
13 1.81 8.6 -1.94 -0.55 25.8 79 1 2 1 0 1 1 0  
14 1.77 9.2 -1.98 -0.57 22.9 79 1 2 1 0 1 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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