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Ligand clusters for UniProt code P0C512

Ligand clusters for P0C512: Ribulose bisphosphate carboxylase large chain OS=Oryza sativa subsp. japonica GN=rbcL PE=1 SV=1

Top 6 (of 10) ligand clusters
Cluster 1.
4 ligand types
6 ligands
Cluster 2.
4 ligand types
6 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 1wddA  
 

Structures

PDB   Schematic diagram
1wddA    
3axkA    
3axmA    

 

 Cluster 1 contains 4 ligand types

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Ligand Description


 
1. Ligand: CAP × 1
2-Carboxyarabinitol-1,5-Diphosphate
PDB code: 1wdd(A).


 
2. Ligand: GOL × 3
Glycerol
PDB codes: 1wdd(A),


 
3. Ligand: 6PG × 1
6-Phosphogluconic acid
PDB code: 3axm(A).


 
4. Ligand: NDP × 1
Nadph dihydro-Nicotinamide-Adenine-Dinucleotide phosphate
PDB code: 3axk(A).

 

 Cluster 2 contains 4 ligand types

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Ligand Description


 
1. Ligand: CAP × 1
2-Carboxyarabinitol-1,5-Diphosphate
PDB code: 1wdd(A).

_Mg
 
2. Metal: _MG × 3
PDB codes: 1wdd(A), 3axk(A), 3axm(A).


 
3. Ligand: 6PG × 1
6-Phosphogluconic acid
PDB code: 3axm(A).


 
4. Ligand: NDP × 1
Nadph dihydro-Nicotinamide-Adenine-Dinucleotide phosphate
PDB code: 3axk(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
Glycerol
PDB code: 1wdd(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
Glycerol
PDB code: 1wdd(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
Glycerol
PDB code: 1wdd(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
Glycerol
PDB code: 1wdd(A).

 

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