PDBsum entry 1waa

Pore analysis for: 1waa calculated with

MOLE 2.0

PDB id

1waa

Pores calculated on whole structure

Pores calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 pores, coloured by radius

13 pores, coloured by radius

13 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

0.84

2.56

31.9

-1.53

-0.53

9.4

79

3

1

5

3

0

3

0

2

1.32

1.35

44.7

-2.11

-0.54

34.5

87

4

8

1

6

0

1

0

ZN 1092 C

3

1.31

1.41

47.8

-0.88

-0.23

18.9

84

5

4

2

5

1

1

0

ZN 1090 A

4

1.32

1.35

50.2

-1.93

-0.49

33.5

89

4

10

1

6

0

0

0

ZN 1093 A ZN 1092 C

5

1.52

1.71

51.1

-1.14

-0.32

21.7

88

5

5

3

8

0

0

0

ZN 1093 C ZN 1090 E

6

1.30

1.42

53.8

-0.63

-0.16

20.0

86

5

6

0

8

1

1

0

ZN 1090 A

7

1.31

1.39

54.5

-2.11

-0.58

33.1

88

5

12

2

6

0

0

0

ZN 1092 C ZN 1092 F

8

1.25

1.43

55.2

-2.11

-0.53

28.1

84

5

10

3

4

0

2

0

ZN 1093 A ZN 1092 C

9

1.50

1.54

56.9

-2.03

-0.57

32.1

87

5

11

3

6

0

0

0

ZN 1093 A ZN 1092 F

10

1.31

1.29

57.1

-2.16

-0.60

29.0

83

5

13

3

4

0

3

0

ZN 1093 A

11

1.30

1.30

59.2

-2.08

-0.57

27.3

84

5

11

4

4

0

2

0

ZN 1093 A ZN 1092 F

12

1.48

1.68

63.3

-1.85

-0.55

31.4

87

5

14

2

8

0

0

0

ZN 1093 A ZN 1093 C

13

1.56

1.74

63.9

-1.72

-0.53

29.2

86

6

13

2

8

0

1

0

ZN 1093 C

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.