PDBsum entry 1w9o

Tunnel analysis for: 1w9o calculated with

MOLE 2.0

PDB id

1w9o

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

5 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.36

2.90

18.6

-1.52

-0.11

22.3

76

2

1

1

3

1

1

0

2

1.36

2.90

22.1

-1.36

-0.09

21.3

77

2

1

1

4

1

1

0

3

1.36

2.91

23.3

-1.97

-0.35

22.9

80

3

1

2

2

1

2

0

4

1.37

3.37

38.4

-0.63

-0.11

13.0

73

3

1

1

4

3

3

0

5

1.23

2.69

16.3

1.32

0.25

7.4

87

2

0

1

6

1

0

0

6

1.18

1.38

20.6

0.12

-0.02

9.8

87

1

1

1

3

1

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.