PDBsum entry 1w5m Go to PDB code:  Tunnel analysis for: 1w5m calculated with MOLE 2.0 PDB id 1w5m Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.09 1.24 45.0 -1.07 -0.30 18.8 81 5 3 3 6 3 2 0   2 1.32 1.57 16.7 -1.13 -0.52 21.1 80 1 3 0 4 1 0 0  MG 1338 B 3 1.45 1.65 23.6 -0.82 -0.38 19.9 83 3 3 0 4 1 0 0  MG 1338 B 4 1.30 1.54 19.2 -1.13 -0.56 20.4 80 1 3 0 4 1 0 0  MG 1340 A 5 1.47 1.67 23.5 -0.88 -0.37 20.8 83 3 3 0 4 1 0 0  MG 1340 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.