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Ligand clusters for UniProt code P0C6E9

Ligand clusters for P0C6E9: Sialidase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=nanH PE=1 SV=1

Top 6 (of 7) ligand clusters
Cluster 1.
2 ligand types
3 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
2 ligand types
2 ligands
Cluster 4.
2 ligand types
3 ligands
Cluster 5.
1 ligand type
3 ligands
Cluster 6.
1 ligand type
3 ligands
Representative protein: 1kitA  
 

Structures

PDB   Schematic diagram
1kitA    
1w0oA    
1w0pA    
2w68A    

 

 Cluster 1 contains 2 ligand types

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Ligand Description


 
1. Ligand: SIA × 2
O-Sialic acid
PDB codes: 1w0o(A), 1w0p(A).


 
2. Ligand: SIA-GAL-BGC × 1
GAL=Beta-D-Galactose, BGC=Beta-D-Glucose, SIA=O-Sialic acid.
PDB code: 2w68(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: SIA-GAL-BGC × 1
GAL=Beta-D-Galactose, BGC=Beta-D-Glucose, SIA=O-Sialic acid.
PDB code: 2w68(A).

 

 Cluster 3 contains 2 ligand types

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Ligand Description


 
1. Ligand: DAN × 1
2-Deoxy-2,3-Dehydro-N-Acetyl-Neuraminic acid
PDB code: 1w0o(A).


 
2. Ligand: GOL × 1
Glycerol
PDB code: 1w0p(A).

 

 Cluster 4 contains 2 ligand types

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Ligand Description

_Ca
 
1. Metal: _CA × 2
PDB codes: 1w0o(A), 1w0p(A).


 
2. Ligand: TRS × 1
2-Amino-2-Hydroxymethyl-Propane-1,3-Diol
PDB code: 1w0p(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description

_Ca
 
1. Metal: _CA × 3
PDB codes: 1kit(A), 1w0o(A), 1w0p(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description

_Ca
 
1. Metal: _CA × 3
PDB codes: 1kit(A), 1w0o(A), 1w0p(A).

 

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