 |
PDBsum entry 1vzx
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 1vzx calculated with  MOLE 2.0
|
PDB id
|
|
|
|
1vzx
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
0 pores,
coloured by radius |
|
9 pores,
coloured by radius
|
9 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.76 |
2.23 |
32.8 |
-1.47 |
-0.02 |
16.0 |
70 |
|
3 |
2 |
3 |
2 |
6 |
1 |
0 |
|
UDP 1372 A NAG 1 C GAL 2 C
|
 |
|
2 |
 |
1.47 |
1.64 |
33.3 |
-1.20 |
0.09 |
18.5 |
73 |
4 |
3 |
2 |
4 |
7 |
0 |
0 |
UDP 1372 A NAG 1 C GAL 2 C
|
|
3 |
 |
1.36 |
1.84 |
54.5 |
-0.38 |
-0.04 |
17.9 |
82 |
3 |
4 |
1 |
6 |
2 |
1 |
0 |
UDP 1372 A
|
|
4 |
 |
1.84 |
2.39 |
29.9 |
-1.29 |
-0.11 |
15.4 |
74 |
5 |
4 |
4 |
4 |
7 |
2 |
0 |
UDP 2372 B NAG 1 D GAL 2 D
|
|
5 |
 |
1.37 |
1.76 |
30.1 |
-0.19 |
0.05 |
16.6 |
83 |
5 |
2 |
1 |
7 |
3 |
1 |
0 |
UDP 2372 B
|
|
6 |
 |
1.44 |
1.70 |
36.6 |
-1.45 |
-0.10 |
23.9 |
78 |
8 |
4 |
3 |
5 |
7 |
0 |
0 |
UDP 2372 B NAG 1 D GAL 2 D
|
|
7 |
 |
1.63 |
1.84 |
41.5 |
-1.72 |
0.45 |
13.6 |
67 |
3 |
2 |
3 |
0 |
5 |
0 |
0 |
NAG 1 D GAL 2 D
|
|
8 |
 |
1.76 |
2.58 |
49.9 |
-1.38 |
0.06 |
14.9 |
74 |
7 |
5 |
5 |
4 |
8 |
2 |
0 |
UDP 2372 B NAG 1 D GAL 2 D
|
 |
9 |
 |
1.43 |
1.69 |
56.6 |
-1.60 |
-0.03 |
22.8 |
76 |
10 |
5 |
4 |
5 |
9 |
0 |
0 |
UDP 2372 B NAG 1 D GAL 2 D
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program