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PDBsum entry 1vzo

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Transferase PDB id
1vzo
Contents
Protein chain
319 a.a. *
Ligands
BME
SO4
Waters ×182
* Residue conservation analysis

References listed in PDB file
Key reference
Title The structure of msk1 reveals a novel autoinhibitory conformation for a dual kinase protein.
Authors K.J.Smith, P.S.Carter, A.Bridges, P.Horrocks, C.Lewis, G.Pettman, A.Clarke, M.Brown, J.Hughes, M.Wilkinson, B.Bax, A.Reith.
Ref. Structure, 2004, 12, 1067-1077. [DOI no: 10.1016/j.str.2004.02.040]
PubMed id 15274926
Note In the PDB file this reference is annotated as "TO BE PUBLISHED". The citation details given above were identified by an automated search of PubMed on title and author names, giving a perfect match.
Abstract
Mitogen and stress-activated kinase-1 (MSK1) is a serine/threonine protein kinase that is activated by either p38 or p42ERK MAPKs in response to stress or mitogenic extracellular stimuli. MSK1 belongs to a family of protein kinases that contain two distinct kinase domains in one polypeptide chain. We report the 1.8 A crystal structure of the N-terminal kinase domain of MSK1. The crystal structure reveals a unique inactive conformation with the ATP binding site blocked by the nucleotide binding loop. This inactive conformation is stabilized by the formation of a new three-stranded beta sheet on the N lobe of the kinase domain. The three beta strands come from residues at the N terminus of the kinase domain, what would be the alphaB helix in the active conformation, and the activation loop. The new three-stranded beta sheet occupies a position equivalent to the N terminus of the alphaC helix in active protein kinases.
Figure 3.
Figure 3. Overall Structure of MSK1 and PKA(A) and (B) are ribbon diagrams of MSK1 N-terminal domain, (C) and (D) are ribbon diagrams of PKA (PDB code 1ATP) with AMP-PNP shown as red ball-and-sticks. Views (B) and (D) are of the back of the kinase and are rotated 90° relative to (A) and (C) about the vertical axis. The nucleotide binding loop of MSK1 and PKA is shown in red and the activation loop is shown in blue. The aB helix and aChelix of PKA (residues 75-104) and the equivalent residues in MSK1 (residues 84-115) are shown in orange. The three stranded b sheet motif on the surface on the MSK1 N lobe is clearly visible in (B). The three strands are from the N terminus (green), aBhelix (orange), and the activation loop (blue).
The above figure is reprinted by permission from Cell Press: Structure (2004, 12, 1067-1077) copyright 2004.
PROCHECK
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