PDBsum entry 1vyz Go to PDB code:  Tunnel analysis for: 1vyz calculated with MOLE 2.0 PDB id 1vyz Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.42 2.17 19.6 0.31 -0.16 6.1 72 2 1 1 5 2 0 0   2 1.32 1.39 28.5 1.46 0.25 4.8 78 0 2 1 10 2 0 0  N5B 300 A 3 1.33 1.39 31.6 1.59 0.37 6.3 76 1 3 0 10 3 0 0  N5B 300 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.