PDBsum entry 1vyt

Tunnel analysis for: 1vyt calculated with

MOLE 2.0

PDB id

1vyt

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.20

1.58

27.2

-0.42

-0.26

9.6

87

2

1

4

6

0

1

0

2

1.19

1.57

32.0

-0.78

-0.30

13.2

83

3

3

3

6

0

2

0

3

1.23

1.74

35.1

-0.38

-0.19

17.8

80

3

3

2

6

1

0

0

4

1.20

1.71

35.7

-0.02

0.07

13.5

76

4

2

2

7

2

2

0

5

1.22

1.80

38.4

0.20

0.12

11.4

80

3

2

3

8

2

1

0

6

1.20

1.62

56.3

-0.68

-0.20

15.7

83

3

4

7

10

3

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.