PDBsum entry 1vrt Go to PDB code:  Tunnel analysis for: 1vrt calculated with MOLE 2.0 PDB id 1vrt Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.21 2.20 16.4 0.76 0.53 14.8 87 3 0 2 4 1 0 0   2 1.24 1.72 19.0 -0.03 0.05 8.6 72 3 0 1 4 1 0 0   3 1.68 1.75 19.0 1.63 0.58 5.4 64 2 1 0 4 4 2 0  NVP 999 A 4 1.25 1.70 24.3 -0.04 -0.06 12.0 76 1 2 2 4 0 0 0   5 1.25 1.71 26.6 -0.65 -0.13 16.4 78 2 1 2 4 0 0 0   6 1.25 1.71 36.8 -0.25 0.02 3.0 73 0 1 3 5 2 1 0   7 1.11 1.22 44.6 -1.91 -0.24 10.9 78 5 2 4 2 3 1 0   8 1.16 1.31 45.5 -0.17 0.08 9.8 73 0 3 4 7 3 0 0   9 1.09 1.22 75.5 -1.33 -0.20 11.4 82 2 4 8 6 4 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.