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PDBsum entry 1vqm
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Tunnel analysis for: 1vqm calculated with  MOLE 2.0
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PDB id
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1vqm
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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2 tunnels,
coloured by tunnel radius |
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3 tunnels,
coloured by
tunnel radius
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3 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.20 |
1.88 |
125.6 |
-0.28 |
-0.32 |
8.6 |
84 |
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5 |
3 |
5 |
8 |
2 |
1 |
0 |
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C 2036 0 C 2037 0 G 2558 0 C 2559 0 C 2560 0 G
2582 0 A 2583 0 U 2597 0 C 2685 0 A 2694 0 C 2695
0 G 2696 0 A 2702 0 A 2703 0 C 2704 0 U 2705 0 C
2707 0 G 2708 0 G 2709 0 U 2710 0 U 2711 0 G 2712
0 G 2713 0 U 2714 0 C 2762 0 G 2763 0 C 2765 0 A
2766 0 C 2767 0 A 2768 0 C 2769 0 A 2799 0 A 2800
0 CL 9312 0
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2 |
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1.21 |
1.26 |
291.9 |
-0.42 |
-0.60 |
6.5 |
87 |
4 |
2 |
4 |
7 |
1 |
1 |
0 |
C 725 0 C 726 0 G 727 0 C 728 0 C 729 0 A 737 0 G
738 0 G 739 0 G 740 0 C 741 0 G 742 0 G 743 0 A
913 0 A 914 0 C 915 0 G 928 0 A 929 0 C 930 0 C
931 0 U 932 0 A 943 0 C 1033 0 G 1034 0 C 1035 0
G 1036 0 G 1037 0 G 1046 0 U 1047 0 G 1048 0 C
1049 0 C 1051 0 A 1058 0 G 1059 0 C 1060 0 C 1061
0 U 1062 0 G 1063 0 U 1064 0 G 1065 0 U 1066 0 A
1067 0 C 1068 0 U 1120 0 C 1126 0 C 1127 0 U 1128
0 C 1129 0 U 1130 0 G 1131 0 A 1231 0 A 1232 0 A
1236 0 U 1237 0 C 1238 0 C 2036 0 C 2037 0 G 2068
0 A 2395 0 C 2396 0 U 2492 0 C 2493 0 G 2524 0 G
2525 0 C 2551 0 C 2552 0 G 2558 0 A 2577 0 G 2578
0 G 2582 0 A 2583 0 U 2597 0 G 2679 0 A 2680 0 A
2681 0 G 2683 0 A 2684 0 C 2685 0 U 2705 0 C 2707
0 G 2708 0 G 2709 0 U 2710 0 U 2711 0 G 2712 0 G
2713 0 U 2714 0 C 2762 0 G 2763 0 C 2765 0 A 2766
0 C 2767 0 A 2768 0 C 2769 0 G 2770 0 A 2800 0 A
2801 0 C 2802 0 C 2803 0 C 2804 0 A 2805 0 MG
8025 0 CL 9312 0 C 3091 9 G 3092 9 A 3093 9
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3 |
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1.74 |
1.82 |
17.1 |
-2.46 |
-0.61 |
27.7 |
89 |
4 |
0 |
1 |
0 |
0 |
0 |
0 |
C 2502 0 A 2503 0 A 2504 0 G 2505 0
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program