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PDBsum entry 1vq7
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Tunnel analysis for: 1vq7 calculated with  MOLE 2.0
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PDB id
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1vq7
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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1 tunnel,
coloured by tunnel radius |
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17 tunnels,
coloured by
tunnel radius
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17 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.19 |
1.45 |
113.1 |
-0.62 |
-0.66 |
7.4 |
87 |
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6 |
0 |
3 |
2 |
0 |
1 |
0 |
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A 16 0 G 17 0 A 520 0 G 535 0 A 536 0 G 539 0 A
540 0 C 541 0 G 544 0 G 610 0 U 611 0 U 612 0 C
613 0 U 614 0 G 615 0 G 618 0 G 622 0 G 634 0 A
635 0 C 638 0 A 639 0 G 640 0 C 764 0 G 765 0 G
901 0 G 902 0 A 1321 0 G 1322 0 A 1355 0 A 1356 0
A 1357 0 A 1358 0 U 1359 0 C 1360 0 A 2101 0 G
2537 0 MG 8109 Y
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2 |
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1.21 |
1.43 |
118.4 |
-0.51 |
-0.61 |
7.1 |
90 |
4 |
1 |
4 |
4 |
0 |
2 |
0 |
U 555 0 C 596 0 A 597 0 G 607 0 A 608 0 U 609 0 G
622 0 G 634 0 A 635 0 C 638 0 A 639 0 G 640 0 C
764 0 G 765 0 G 901 0 G 902 0 U 1320 0 A 1321 0 G
1322 0 G 1323 0 G 1324 0 G 1325 0 U 1326 0 A 1331
0 C 1332 0 U 1333 0 A 1355 0 A 1356 0 A 1357 0 A
1358 0 U 1359 0 C 1360 0 A 2101 0 G 2537 0
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3 |
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1.21 |
1.43 |
121.3 |
-0.92 |
-0.67 |
11.8 |
85 |
6 |
3 |
2 |
2 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 U 768 0 C 769 0 C 770 0 G
771 0 G 772 0 A 773 0 U 866 0 A 867 0 G 868 0 G
869 0 G 887 0 U 888 0 C 889 0 C 890 0 A 895 0 C
896 0 A 897 0 U 1359 0 C 1360 0 G 1460 0 U 1461 0
C 1474 0 G 1475 0 A 1476 0 C 1477 0 U 1478 0 A
1479 0 C 1862 0 G 1863 0 A 1869 0 C 1872 0 A 2101
0 G 2249 0 G 2250 0 A 2479 0 G 2480 0
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4 |
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1.19 |
1.35 |
121.5 |
-0.49 |
-0.59 |
8.6 |
77 |
6 |
1 |
1 |
3 |
2 |
1 |
0 |
A 114 0 U 115 0 A 117 0 G 118 0 A 119 0 A 131 0 A
132 0 C 764 0 G 765 0 A 766 0 U 768 0 C 769 0 C
770 0 G 771 0 G 772 0 A 773 0 C 774 0 A 867 0 G
868 0 G 869 0 G 887 0 U 888 0 C 889 0 C 890 0 A
895 0 C 896 0 A 897 0 U 1359 0 C 1360 0 C 1462 0
A 1463 0 U 1464 0 A 1465 0 C 1474 0 G 1475 0 U
1480 0 G 1481 0 A 2101 0 A 2479 0 G 2480 0
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5 |
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1.20 |
1.43 |
122.9 |
-0.55 |
-0.71 |
5.4 |
92 |
3 |
0 |
4 |
2 |
0 |
1 |
0 |
A 542 0 G 543 0 U 555 0 C 556 0 C 557 0 U 595 0 C
596 0 A 597 0 C 598 0 G 607 0 A 608 0 U 609 0 G
622 0 G 634 0 A 635 0 C 638 0 A 639 0 G 640 0 C
764 0 G 765 0 G 901 0 G 902 0 U 1320 0 A 1321 0 G
1322 0 G 1323 0 G 1324 0 G 1325 0 U 1326 0 A 1331
0 C 1332 0 U 1333 0 A 1355 0 A 1356 0 A 1357 0 A
1358 0 U 1359 0 C 1360 0 A 2101 0 G 2537 0
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6 |
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1.22 |
1.38 |
128.1 |
-0.89 |
-0.69 |
11.2 |
84 |
3 |
4 |
3 |
2 |
0 |
1 |
0 |
U 214 0 U 651 0 G 652 0 G 681 0 A 682 0 G 683 0 G
684 0 C 685 0 A 686 0 C 687 0 G 689 0 G 690 0 G
691 0 G 742 0 A 756 0 C 757 0 A 761 0 C 762 0 C
763 0 C 764 0 G 765 0 A 766 0 A 895 0 C 896 0 A
897 0 A 926 0 U 927 0 G 1037 0 G 1038 0 G 1039 0
A 1040 0 U 1041 0 U 1359 0 C 1360 0 A 2101 0 A
2479 0 G 2480 0 NA 9141 0
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7 |
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1.22 |
1.38 |
132.7 |
-1.06 |
-0.71 |
12.2 |
86 |
5 |
4 |
4 |
2 |
0 |
1 |
0 |
U 645 0 G 646 0 U 647 0 G 648 0 U 649 0 C 650 0 A
665 0 A 666 0 C 667 0 U 675 0 C 676 0 G 678 0 G
679 0 G 680 0 G 681 0 A 750 0 U 751 0 U 753 0 G
755 0 A 756 0 C 757 0 A 761 0 C 762 0 C 763 0 C
764 0 G 765 0 A 766 0 A 895 0 C 896 0 A 897 0 U
1359 0 C 1360 0 A 2101 0 A 2479 0 G 2480 0
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8 |
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1.19 |
1.36 |
140.9 |
-0.38 |
-0.72 |
4.6 |
83 |
1 |
1 |
1 |
2 |
0 |
1 |
0 |
U 624 0 U 625 0 U 626 0 A 632 0 C 633 0 G 634 0 C
764 0 G 765 0 G 901 0 C 1044 0 G 1045 0 G 1046 0
U 1047 0 G 1048 0 C 1049 0 A 1058 0 G 1059 0 C
1060 0 C 1061 0 U 1062 0 G 1119 0 U 1120 0 C 1126
0 C 1127 0 U 1128 0 C 1129 0 U 1130 0 C 1228 0 A
1231 0 A 1232 0 A 1236 0 U 1237 0 C 1238 0 A 1358
0 U 1359 0 C 1360 0 A 2101 0 G 2481 0 G 2482 0 A
2483 0 U 2492 0 C 2493 0 G 2524 0 G 2525 0 C 2533
0 U 2535 0 G 2537 0 A 2776 0 G 2777 0 A 2792 0 NA
9150 0 C 3091 9 G 3092 9 A 3093 9
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9 |
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1.22 |
1.41 |
143.9 |
-0.81 |
-0.72 |
10.2 |
86 |
2 |
4 |
2 |
2 |
0 |
1 |
0 |
U 624 0 U 625 0 U 626 0 A 632 0 C 633 0 G 634 0 C
764 0 G 765 0 G 901 0 G 911 0 A 913 0 A 914 0 C
915 0 A 929 0 C 930 0 C 931 0 A 943 0 C 1044 0 G
1045 0 G 1046 0 U 1047 0 U 1062 0 G 1063 0 U 1064
0 G 1065 0 U 1066 0 G 1087 0 A 1088 0 G 1089 0 C
1262 0 C 1263 0 U 1264 0 G 1265 0 U 1266 0 C 1267
0 G 1284 0 U 1285 0 A 1286 0 A 1287 0 G 1290 0 A
1358 0 U 1359 0 C 1360 0 A 2101 0 G 2481 0 G 2482
0 A 2483 0 C 2533 0 U 2535 0 G 2537 0 NA 9150 0
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10 |
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1.18 |
1.60 |
184.8 |
-0.72 |
-0.69 |
7.3 |
85 |
3 |
2 |
3 |
2 |
0 |
2 |
0 |
U 651 0 G 739 0 G 740 0 C 741 0 G 742 0 A 756 0 C
757 0 A 761 0 C 762 0 C 763 0 C 764 0 G 765 0 A
766 0 A 895 0 C 896 0 A 897 0 A 926 0 U 927 0 G
1037 0 G 1038 0 G 1039 0 A 1040 0 U 1041 0 U 1359
0 C 1360 0 A 2101 0 U 2322 0 G 2323 0 G 2324 0 C
2325 0 U 2358 0 A 2370 0 G 2371 0 A 2372 0 U 2373
0 A 2374 0 G 2375 0 U 2384 0 G 2385 0 U 2386 0 U
2387 0 G 2397 0 A 2398 0 G 2399 0 G 2400 0 A 2401
0 A 2402 0 C 2403 0 G 2418 0 U 2419 0 G 2420 0 G
2421 0 U 2422 0 A 2479 0 G 2480 0 MG 8049 0
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11 |
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1.18 |
1.53 |
189.4 |
-0.53 |
-0.72 |
5.7 |
90 |
3 |
1 |
3 |
4 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 A 767 0 U 768 0 U 825 0 G
828 0 G 830 0 U 831 0 C 839 0 U 845 0 A 846 0 C
847 0 C 848 0 C 849 0 U 850 0 U 883 0 C 884 0 U
888 0 A 895 0 C 896 0 A 897 0 U 1359 0 C 1360 0 G
1378 0 A 1379 0 A 1381 0 C 1403 0 C 1404 0 A 1407
0 A 1712 0 G 1713 0 C 1714 0 C 1808 0 G 1809 0 G
1837 0 U 1838 0 G 2099 0 A 2100 0 A 2101 0 C 2477
0 U 2478 0 A 2479 0 G 2480 0 C 2644 0 U 2645 0 G
2646 0 C 2728 0 C 2729 0 G 2730 0 G 2731 0 U 2732
0 A 2741 0 G 2742 0 A 2743 0 G 2744 0 C 2745 0 A
2746 0 C 2747 0 G 2748 0 U 2749 0 G 2750 0 U 2866
0 G 2867 0 C 2868 0 G 2884 0 A 2885 0 C 2886 0 MG
8024 0 MG 8048 0 NA 9179 0
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12 |
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1.18 |
1.55 |
193.6 |
-0.46 |
-0.73 |
5.4 |
85 |
3 |
1 |
1 |
3 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 A 767 0 U 768 0 A 788 0 C
789 0 A 827 0 G 828 0 A 829 0 G 830 0 U 831 0 C
839 0 U 845 0 A 846 0 C 847 0 C 848 0 U 850 0 U
883 0 C 884 0 U 888 0 A 895 0 C 896 0 A 897 0 U
1359 0 C 1360 0 A 1406 0 A 1407 0 U 1408 0 U 1488
0 G 1496 0 U 1505 0 U 1544 0 C 1545 0 G 1571 0 A
1572 0 C 1617 0 G 1618 0 G 1619 0 C 1620 0 G 1636
0 A 1637 0 A 1641 0 A 1642 0 C 1643 0 A 1682 0 G
1695 0 U 1696 0 G 1697 0 U 1698 0 C 1699 0 C 1700
0 A 1701 0 G 1837 0 U 1838 0 G 2099 0 A 2100 0 A
2101 0 C 2477 0 U 2478 0 A 2479 0 G 2480 0 C 2644
0 U 2645 0 G 2646 0 NA 9179 0
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13 |
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1.18 |
1.56 |
192.0 |
-1.28 |
-0.68 |
13.4 |
83 |
15 |
3 |
8 |
3 |
0 |
2 |
0 |
C 31 0 C 62 0 U 63 0 G 77 0 G 78 0 G 79 0 C 85 0
A 86 0 C 101 0 A 102 0 C 300 0 G 301 0 A 302 0 C
303 0 G 304 0 A 305 0 A 306 0 G 307 0 C 344 0 G
345 0 C 444 0 U 445 0 C 461 0 A 462 0 A 466 0 G
467 0 A 476 0 G 479 0 C 480 0 G 514 0 G 622 0 G
634 0 A 635 0 G 636 0 C 637 0 C 638 0 C 764 0 G
765 0 G 901 0 G 902 0 A 1357 0 A 1358 0 U 1359 0
C 1360 0 C 1361 0 U 1362 0 G 1363 0 G 1364 0 A
1427 0 C 1428 0 C 2056 0 A 2101 0 G 2537 0 MG
8063 0
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14 |
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1.18 |
1.58 |
196.2 |
-0.45 |
-0.73 |
5.3 |
85 |
3 |
1 |
1 |
3 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 A 767 0 U 768 0 G 787 0 A
788 0 C 789 0 A 827 0 G 828 0 A 829 0 G 830 0 U
831 0 C 839 0 U 845 0 A 846 0 C 847 0 C 848 0 U
850 0 U 883 0 C 884 0 U 888 0 A 895 0 C 896 0 A
897 0 U 1359 0 C 1360 0 A 1406 0 A 1407 0 U 1408
0 G 1490 0 G 1491 0 A 1493 0 C 1514 0 U 1531 0 G
1532 0 G 1535 0 C 1536 0 C 1537 0 C 1575 0 G 1576
0 A 1616 0 C 1617 0 A 1642 0 C 1643 0 C 1644 0 A
1661 0 C 1662 0 G 1663 0 C 1666 0 A 1667 0 A 1682
0 G 1695 0 U 1696 0 G 1697 0 U 1698 0 C 1699 0 C
1700 0 A 1701 0 G 1837 0 U 1838 0 G 2099 0 A 2100
0 A 2101 0 C 2477 0 U 2478 0 A 2479 0 G 2480 0 C
2644 0 U 2645 0 G 2646 0 NA 9179 0
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15 |
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1.17 |
1.55 |
194.7 |
-1.11 |
-0.63 |
11.6 |
83 |
11 |
2 |
5 |
4 |
1 |
1 |
0 |
C 29 0 C 31 0 C 87 0 G 307 0 C 309 0 U 310 0 C
311 0 U 312 0 G 314 0 A 317 0 C 318 0 A 319 0 G
320 0 A 321 0 G 322 0 C 323 0 C 330 0 G 332 0 G
333 0 G 334 0 U 335 0 A 337 0 C 338 0 A 339 0 A
340 0 C 341 0 A 462 0 A 466 0 G 467 0 A 476 0 G
479 0 C 480 0 U 481 0 G 482 0 C 483 0 A 484 0 G
514 0 G 622 0 G 634 0 A 635 0 G 636 0 C 637 0 C
638 0 C 764 0 G 765 0 G 901 0 G 902 0 C 1342 0 A
1357 0 A 1358 0 U 1359 0 C 1360 0 C 1361 0 U 1362
0 G 1363 0 G 1364 0 A 1427 0 C 1428 0 C 2056 0 A
2101 0 G 2537 0 MG 8063 0
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16 |
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1.18 |
1.55 |
208.8 |
-0.51 |
-0.72 |
6.1 |
85 |
4 |
2 |
3 |
3 |
0 |
2 |
1 |
C 764 0 G 765 0 A 766 0 A 767 0 U 768 0 U 825 0 G
828 0 G 830 0 U 831 0 C 839 0 U 845 0 A 846 0 C
847 0 C 848 0 C 849 0 U 850 0 U 883 0 C 884 0 U
888 0 A 895 0 C 896 0 A 897 0 U 1359 0 C 1360 0 G
1378 0 A 1379 0 A 1407 0 A 1712 0 G 1713 0 G 1739
0 U 1741 0 A 1742 0 G 1756 0 U 1757 0 U 1758 0 A
1759 0 C 1816 0 U 1817 0 C 1818 0 G 1837 0 U 1838
0 U 2032 0 G 2099 0 A 2100 0 A 2101 0 C 2477 0 U
2478 0 A 2479 0 G 2480 0 C 2644 0 U 2645 0 G 2646
0 U 2721 0 G 2722 0 G 2723 0 U 2724 0 G 2725 0 C
2752 0 G 2753 0 G 2754 0 G 2755 0 U 2756 0 G 2860
0 G 2861 0 G 2862 0 G 2863 0 A 2890 0 MG 8071 0 N
A 9179 0 MG 8055 B
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17 |
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1.08 |
2.38 |
31.7 |
1.02 |
0.05 |
5.1 |
81 |
1 |
0 |
0 |
7 |
1 |
1 |
0 |
U 1164 0 G 1165 0 A 1166 0 G 1167 0 A 1174 0
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program