 |
PDBsum entry 1vq6
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 1vq6 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
1vq6
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
9 tunnels,
coloured by tunnel radius |
|
9 tunnels,
coloured by
tunnel radius
|
9 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.19 |
1.19 |
17.7 |
-0.40 |
-0.80 |
3.4 |
0 |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
U 1169 0 A 1173 0 A 1174 0 C 1176 0 A 1177 0 G
1178 0 C 1179 0 U 1180 0 A 1181 0 A 1194 0 G 1195
0
|
 |
|
2 |
 |
1.19 |
1.19 |
36.6 |
-0.90 |
-0.78 |
10.8 |
83 |
1 |
1 |
0 |
1 |
0 |
0 |
0 |
A 1166 0 G 1167 0 C 1168 0 U 1169 0 U 1170 0 G
1172 0 A 1173 0 A 1174 0 C 1176 0 A 1177 0 G 1178
0 C 1179 0 U 1180 0
|
|
3 |
 |
1.19 |
1.19 |
36.6 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 1162 0 G 1163 0 U 1164 0 A 1166 0 U 1169 0 A
1173 0 A 1174 0 G 1175 0 C 1176 0 A 1177 0 G 1178
0 C 1179 0 U 1180 0 C 1183 0 C 1184 0 U 1185 0 A
1191 0 A 1192 0 A 1193 0
|
|
4 |
 |
1.19 |
1.19 |
39.3 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 1160 0 A 1161 0 G 1162 0 G 1163 0 U 1164 0 A
1166 0 U 1169 0 A 1173 0 A 1174 0 G 1175 0 C 1176
0 A 1177 0 G 1178 0 C 1179 0 U 1180 0 A 1192 0 A
1193 0 G 1203 0
|
|
5 |
 |
1.21 |
1.21 |
17.0 |
-1.10 |
-0.53 |
18.0 |
79 |
2 |
1 |
0 |
1 |
0 |
1 |
0 |
U 137 0
|
|
6 |
 |
1.23 |
1.23 |
18.1 |
-1.03 |
-0.64 |
14.8 |
79 |
2 |
1 |
0 |
1 |
0 |
1 |
0 |
C 136 0 U 137 0 C 139 0 C 260 0 A 261 0
|
|
7 |
 |
1.11 |
1.11 |
17.3 |
-0.67 |
-0.83 |
7.0 |
92 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
A 485 0 A 486 0 G 487 0 U 488 0 G 504 0 C 505 0 G
506 0 G 512 0
|
|
8 |
 |
1.47 |
1.47 |
21.7 |
-1.55 |
-0.62 |
18.5 |
88 |
2 |
1 |
1 |
0 |
0 |
1 |
0 |
G 964 0 A 965 0 U 966 0 U 967 0 G 968 0 C 1004 0
|
 |
9 |
 |
1.33 |
1.37 |
17.6 |
-0.79 |
-0.72 |
2.8 |
94 |
0 |
0 |
3 |
0 |
0 |
1 |
0 |
A 1166 0 G 1167 0 U 1180 0 A 1181 0 C 1183 0 C
1184 0 A 1192 0
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program