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PDBsum entry 1vq5
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Tunnel analysis for: 1vq5 calculated with  MOLE 2.0
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PDB id
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1vq5
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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23 tunnels,
coloured by tunnel radius |
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31 tunnels,
coloured by
tunnel radius
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31 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.29 |
1.61 |
126.8 |
-0.87 |
-0.71 |
10.9 |
85 |
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5 |
3 |
2 |
2 |
0 |
1 |
0 |
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C 764 0 G 765 0 A 766 0 U 768 0 C 769 0 C 770 0 G
771 0 G 772 0 A 773 0 U 866 0 A 867 0 G 868 0 G
869 0 G 887 0 U 888 0 C 889 0 A 895 0 C 896 0 A
897 0 U 1359 0 C 1360 0 G 1460 0 U 1461 0 C 1474
0 G 1475 0 A 1476 0 C 1477 0 U 1478 0 A 1479 0 C
1862 0 G 1863 0 A 1869 0 C 1872 0 A 2101 0 C 2248
0 G 2249 0 G 2250 0 A 2479 0 G 2480 0 MG 8050 0
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2 |
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1.19 |
1.19 |
129.2 |
-0.59 |
-0.77 |
5.2 |
83 |
0 |
2 |
3 |
2 |
0 |
1 |
0 |
U 624 0 U 625 0 U 626 0 A 632 0 C 633 0 G 634 0 C
764 0 G 765 0 G 901 0 G 956 0 A 957 0 G 958 0 C
959 0 G 960 0 U 1001 0 G 1002 0 U 1003 0 C 1044 0
G 1046 0 U 1047 0 G 1048 0 C 1049 0 G 1050 0 C
1051 0 G 1052 0 G 1055 0 C 1060 0 C 1061 0 U 1062
0 A 1358 0 U 1359 0 C 1360 0 A 2101 0 G 2481 0 G
2482 0 A 2483 0 C 2533 0 U 2535 0 G 2537 0 NA
9150 0 NA 9152 0 A 3077 9 U 3079 9 A 3080 9 C
3081 9 A 3093 9 G 3094 9 C 3095 9 A 3105 9 C 3106
9 C 3107 9
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3 |
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1.22 |
1.40 |
130.9 |
-0.69 |
-0.73 |
6.7 |
92 |
4 |
1 |
4 |
2 |
0 |
1 |
0 |
G 554 0 U 555 0 C 556 0 C 557 0 U 595 0 C 596 0 A
597 0 C 598 0 G 607 0 A 608 0 U 609 0 G 622 0 G
634 0 A 635 0 C 638 0 A 639 0 G 640 0 C 764 0 G
765 0 G 901 0 G 902 0 U 1320 0 A 1321 0 G 1322 0
G 1323 0 G 1324 0 G 1325 0 U 1326 0 A 1331 0 C
1332 0 U 1333 0 A 1355 0 A 1356 0 A 1357 0 A 1358
0 U 1359 0 C 1360 0 A 2101 0 G 2537 0
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4 |
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1.30 |
1.46 |
135.2 |
-0.97 |
-0.62 |
12.2 |
82 |
6 |
3 |
4 |
3 |
1 |
1 |
0 |
A 466 0 G 467 0 U 468 0 A 476 0 U 488 0 G 500 0 G
501 0 A 502 0 G 503 0 A 509 0 U 510 0 G 512 0 A
513 0 G 514 0 C 764 0 G 765 0 A 766 0 A 767 0 U
768 0 A 844 0 A 882 0 U 883 0 U 888 0 C 889 0 A
895 0 C 896 0 A 897 0 U 1359 0 C 1360 0 A 1427 0
C 1428 0 A 1689 0 A 2101 0 A 2479 0 G 2480 0
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5 |
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1.29 |
1.61 |
136.1 |
-0.70 |
-0.71 |
8.9 |
84 |
3 |
3 |
1 |
2 |
0 |
1 |
0 |
A 37 0 G 38 0 G 39 0 G 209 0 A 234 0 C 235 0 A
236 0 C 294 0 C 295 0 G 296 0 C 356 0 A 360 0 U
645 0 G 646 0 U 647 0 G 648 0 U 649 0 C 650 0 A
665 0 A 666 0 C 667 0 C 668 0 G 669 0 A 671 0 U
673 0 A 674 0 A 750 0 U 751 0 U 753 0 G 755 0 A
756 0 C 757 0 A 761 0 C 762 0 C 763 0 C 764 0 G
765 0 A 766 0 A 895 0 C 896 0 A 897 0 U 1359 0 C
1360 0 A 2101 0 A 2479 0 G 2480 0 NA 9104 C
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6 |
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1.19 |
1.19 |
144.3 |
-0.76 |
-0.75 |
8.9 |
86 |
2 |
4 |
2 |
2 |
0 |
1 |
0 |
U 624 0 U 625 0 U 626 0 A 632 0 C 633 0 G 634 0 C
764 0 G 765 0 G 901 0 G 911 0 A 913 0 A 914 0 C
915 0 A 929 0 C 930 0 C 931 0 A 943 0 C 1044 0 G
1045 0 G 1046 0 U 1047 0 U 1062 0 G 1063 0 U 1064
0 G 1065 0 U 1066 0 A 1067 0 G 1087 0 A 1088 0 G
1089 0 C 1263 0 U 1264 0 G 1265 0 U 1266 0 C 1267
0 G 1284 0 U 1285 0 A 1286 0 A 1287 0 G 1290 0 A
1358 0 U 1359 0 C 1360 0 A 2101 0 G 2481 0 G 2482
0 A 2483 0 C 2533 0 U 2535 0 G 2537 0 NA 9150 0
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7 |
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1.18 |
1.37 |
142.0 |
-0.40 |
-0.75 |
4.4 |
83 |
1 |
1 |
1 |
2 |
0 |
1 |
0 |
U 624 0 U 625 0 U 626 0 A 632 0 C 633 0 G 634 0 C
764 0 G 765 0 G 901 0 C 1044 0 G 1046 0 U 1047 0
G 1048 0 C 1049 0 A 1058 0 G 1059 0 C 1060 0 C
1061 0 U 1062 0 G 1119 0 U 1120 0 C 1126 0 U 1128
0 C 1129 0 U 1130 0 C 1228 0 C 1229 0 A 1231 0 A
1232 0 A 1236 0 U 1237 0 C 1238 0 A 1358 0 U 1359
0 C 1360 0 A 2101 0 G 2481 0 G 2482 0 A 2483 0 U
2492 0 C 2493 0 G 2524 0 G 2525 0 C 2533 0 U 2535
0 G 2537 0 A 2776 0 G 2777 0 A 2792 0 NA 9150 0 C
3091 9 G 3092 9 A 3093 9
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8 |
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1.30 |
1.46 |
149.1 |
-0.43 |
-0.75 |
4.5 |
85 |
1 |
2 |
1 |
2 |
0 |
1 |
0 |
U 624 0 U 625 0 U 626 0 A 632 0 C 633 0 G 634 0 C
707 0 A 708 0 G 709 0 C 764 0 G 765 0 G 901 0 C
910 0 G 911 0 A 913 0 A 914 0 C 915 0 A 929 0 C
930 0 C 931 0 U 932 0 C 933 0 C 934 0 G 935 0 C
936 0 G 938 0 A 939 0 A 943 0 U 1028 0 U 1029 0 U
1030 0 G 1031 0 A 1032 0 C 1033 0 C 1044 0 G 1045
0 G 1046 0 U 1047 0 U 1062 0 G 1063 0 U 1064 0 G
1065 0 U 1066 0 A 1067 0 C 1289 0 A 1358 0 U 1359
0 C 1360 0 A 2101 0 G 2481 0 G 2482 0 A 2483 0 C
2533 0 U 2535 0 G 2537 0 NA 9150 0
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9 |
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1.23 |
1.40 |
147.5 |
-0.57 |
-0.77 |
6.6 |
85 |
1 |
3 |
1 |
2 |
0 |
1 |
0 |
U 624 0 U 625 0 U 626 0 A 632 0 C 633 0 G 634 0 C
764 0 G 765 0 G 901 0 U 909 0 C 910 0 G 911 0 A
913 0 A 914 0 C 915 0 A 929 0 C 930 0 C 931 0 C
933 0 C 934 0 G 935 0 A 943 0 U 1030 0 G 1031 0 A
1032 0 C 1033 0 C 1044 0 G 1045 0 G 1046 0 U 1047
0 U 1062 0 G 1063 0 U 1064 0 G 1065 0 U 1066 0 A
1067 0 A 1271 0 C 1272 0 C 1273 0 A 1274 0 C 1275
0 U 1276 0 C 1289 0 A 1358 0 U 1359 0 C 1360 0 A
2101 0 G 2481 0 G 2482 0 A 2483 0 C 2533 0 U 2535
0 G 2537 0 NA 9150 0
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10 |
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1.21 |
1.47 |
176.7 |
-0.47 |
-0.72 |
5.7 |
85 |
3 |
1 |
1 |
3 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 A 767 0 U 768 0 G 833 0 G
834 0 U 835 0 G 836 0 C 839 0 U 845 0 A 846 0 U
883 0 C 884 0 U 888 0 A 895 0 C 896 0 A 897 0 U
1359 0 C 1360 0 G 1751 0 C 1753 0 A 1821 0 A 1822
0 G 1823 0 C 1824 0 U 1825 0 C 1826 0 G 1827 0 G
1828 0 A 1829 0 G 1837 0 U 1838 0 G 1849 0 U 1850
0 G 1884 0 A 1885 0 A 1886 0 U 1887 0 C 1888 0 C
1889 0 U 1890 0 A 2011 0 G 2013 0 G 2014 0 A 2015
0 U 2016 0 U 2017 0 A 2018 0 A 2019 0 C 2020 0 C
2021 0 A 2022 0 G 2023 0 A 2024 0 C 2026 0 G 2099
0 A 2100 0 A 2101 0 C 2477 0 U 2478 0 A 2479 0 G
2480 0 G 2617 0 G 2643 0 C 2644 0 U 2645 0 G 2646
0
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11 |
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1.21 |
1.47 |
184.1 |
-0.63 |
-0.74 |
7.5 |
84 |
3 |
3 |
2 |
3 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 A 767 0 U 768 0 G 828 0 A
829 0 G 830 0 U 831 0 C 839 0 U 845 0 A 846 0 C
847 0 C 848 0 U 850 0 U 883 0 C 884 0 U 888 0 A
895 0 C 896 0 A 897 0 U 1359 0 C 1360 0 A 1407 0
U 1408 0 G 1409 0 G 1410 0 A 1411 0 G 1449 0 C
1450 0 A 1494 0 C 1495 0 G 1496 0 G 1497 0 U 1499
0 U 1505 0 U 1506 0 C 1507 0 C 1508 0 G 1510 0 U
1511 0 C 1680 0 G 1681 0 A 1682 0 G 1695 0 U 1696
0 G 1697 0 U 1698 0 C 1700 0 G 1719 0 G 1837 0 U
1838 0 G 2099 0 A 2100 0 A 2101 0 C 2477 0 U 2478
0 A 2479 0 G 2480 0 C 2644 0 U 2645 0 G 2646 0 NA
9179 0
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12 |
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1.22 |
1.50 |
190.1 |
-0.49 |
-0.72 |
5.3 |
90 |
3 |
1 |
3 |
4 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 A 767 0 U 768 0 U 825 0 G
828 0 G 830 0 U 831 0 C 839 0 U 845 0 A 846 0 C
847 0 C 848 0 C 849 0 U 850 0 U 883 0 C 884 0 U
888 0 A 895 0 C 896 0 A 897 0 U 1359 0 C 1360 0 G
1378 0 A 1379 0 A 1381 0 C 1403 0 C 1404 0 A 1407
0 A 1712 0 G 1713 0 C 1714 0 C 1808 0 G 1809 0 G
1837 0 U 1838 0 G 2099 0 A 2100 0 A 2101 0 C 2477
0 U 2478 0 A 2479 0 G 2480 0 C 2644 0 U 2645 0 G
2646 0 C 2728 0 C 2729 0 G 2730 0 G 2731 0 U 2732
0 A 2741 0 G 2742 0 A 2743 0 G 2744 0 C 2745 0 A
2746 0 C 2747 0 G 2748 0 U 2749 0 G 2750 0 U 2866
0 G 2867 0 C 2868 0 G 2884 0 A 2885 0 C 2886 0 MG
8024 0 MG 8048 0 NA 9179 0
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13 |
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1.21 |
1.48 |
189.0 |
-0.44 |
-0.74 |
5.0 |
85 |
2 |
1 |
1 |
3 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 A 767 0 U 768 0 G 787 0 A
788 0 C 789 0 A 827 0 G 828 0 A 829 0 G 830 0 U
831 0 C 839 0 U 845 0 A 846 0 C 847 0 C 848 0 U
850 0 U 883 0 C 884 0 U 888 0 A 895 0 C 896 0 A
897 0 U 1359 0 C 1360 0 A 1406 0 A 1407 0 U 1408
0 G 1490 0 G 1491 0 A 1493 0 U 1531 0 G 1532 0 G
1535 0 C 1536 0 C 1537 0 C 1575 0 G 1576 0 U 1577
0 G 1614 0 A 1615 0 A 1616 0 C 1617 0 A 1642 0 C
1643 0 C 1644 0 A 1661 0 C 1662 0 G 1663 0 G 1665
0 A 1682 0 G 1695 0 U 1696 0 G 1697 0 U 1698 0 C
1699 0 C 1700 0 A 1701 0 G 1837 0 U 1838 0 G 2099
0 A 2100 0 A 2101 0 C 2477 0 U 2478 0 A 2479 0 G
2480 0 C 2644 0 U 2645 0 G 2646 0 NA 9179 0
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14 |
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1.21 |
1.49 |
195.6 |
-0.45 |
-0.75 |
5.1 |
85 |
2 |
1 |
1 |
3 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 A 767 0 U 768 0 A 788 0 C
789 0 A 827 0 G 828 0 A 829 0 G 830 0 U 831 0 C
839 0 U 845 0 A 846 0 C 847 0 C 848 0 U 850 0 U
883 0 C 884 0 U 888 0 A 895 0 C 896 0 A 897 0 U
1359 0 C 1360 0 A 1406 0 A 1407 0 U 1408 0 U 1488
0 G 1496 0 U 1505 0 U 1544 0 C 1545 0 G 1571 0 A
1572 0 C 1617 0 G 1618 0 G 1619 0 C 1620 0 G 1621
0 G 1622 0 C 1623 0 A 1641 0 A 1642 0 C 1643 0 A
1682 0 G 1695 0 U 1696 0 G 1697 0 U 1698 0 C 1699
0 C 1700 0 A 1701 0 G 1837 0 U 1838 0 G 2099 0 A
2100 0 A 2101 0 C 2477 0 U 2478 0 A 2479 0 G 2480
0 C 2644 0 U 2645 0 G 2646 0 NA 9179 0
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15 |
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1.19 |
1.48 |
194.9 |
-0.54 |
-0.75 |
6.2 |
85 |
2 |
4 |
3 |
3 |
0 |
2 |
1 |
C 764 0 G 765 0 A 766 0 A 767 0 U 768 0 U 825 0 G
828 0 G 830 0 U 831 0 C 839 0 U 845 0 A 846 0 C
847 0 C 848 0 C 849 0 U 850 0 U 883 0 C 884 0 U
888 0 A 895 0 C 896 0 A 897 0 U 1359 0 C 1360 0 G
1378 0 A 1379 0 A 1407 0 A 1712 0 G 1713 0 G 1739
0 U 1741 0 A 1742 0 G 1756 0 U 1757 0 U 1758 0 A
1759 0 C 1816 0 U 1817 0 C 1818 0 G 1837 0 U 1838
0 U 2032 0 G 2099 0 A 2100 0 A 2101 0 C 2477 0 U
2478 0 A 2479 0 G 2480 0 C 2644 0 U 2645 0 G 2646
0 U 2721 0 G 2722 0 G 2723 0 U 2724 0 G 2725 0 C
2752 0 G 2753 0 G 2754 0 G 2755 0 U 2756 0 G 2861
0 G 2862 0 G 2863 0 MG 8071 0 NA 9179 0 MG 8055 B
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16 |
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1.22 |
1.22 |
207.5 |
-0.67 |
-0.73 |
6.6 |
87 |
2 |
4 |
6 |
5 |
1 |
1 |
0 |
U 624 0 U 625 0 U 626 0 A 632 0 C 633 0 G 634 0 C
764 0 G 765 0 G 901 0 G 956 0 C 1044 0 G 1046 0 U
1047 0 G 1048 0 C 1049 0 G 1050 0 C 1051 0 G 1052
0 G 1055 0 C 1060 0 C 1061 0 U 1062 0 A 1133 0 G
1135 0 U 1136 0 G 1137 0 U 1141 0 C 1142 0 A 1215
0 G 1216 0 G 1217 0 U 1218 0 U 1220 0 G 1221 0 A
1222 0 G 1223 0 G 1224 0 A 1358 0 U 1359 0 C 1360
0 A 2101 0 G 2481 0 G 2482 0 A 2483 0 C 2533 0 U
2535 0 G 2537 0 G 2782 0 A 2783 0 A 2784 0 C 2785
0 G 2786 0 C 2787 0 A 2788 0 U 2789 0 NA 9150 0 A
3080 9 C 3081 9 G 3092 9 A 3093 9 G 3094 9 C 3095
9 C 3096 9
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17 |
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1.23 |
1.23 |
15.5 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
C 1168 0 U 1169 0 A 1173 0 A 1174 0 C 1176 0 A
1177 0 G 1178 0 C 1179 0 U 1180 0 A 1194 0 G 1195
0
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18 |
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1.11 |
1.11 |
22.2 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
C 1168 0 U 1169 0 G 1172 0 A 1173 0 A 1174 0 C
1176 0 A 1177 0 G 1178 0 A 1199 0 A 1200 0 C 1201
0
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19 |
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1.22 |
1.22 |
30.5 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 1166 0 G 1167 0 C 1168 0 U 1169 0 U 1170 0 G
1172 0 A 1173 0 A 1174 0 C 1176 0 A 1177 0 G 1178
0 C 1179 0 U 1180 0
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20 |
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1.22 |
1.22 |
37.3 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 1163 0 U 1164 0 A 1166 0 C 1168 0 U 1169 0 A
1173 0 A 1174 0 G 1175 0 C 1176 0 A 1177 0 G 1178
0 C 1179 0 U 1180 0 C 1183 0 C 1184 0 U 1185 0 A
1191 0 A 1192 0 A 1193 0
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21 |
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1.22 |
1.22 |
38.7 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 1159 0 G 1160 0 A 1161 0 G 1162 0 G 1163 0 U
1164 0 A 1166 0 C 1168 0 U 1169 0 A 1173 0 A 1174
0 G 1175 0 C 1176 0 A 1177 0 G 1178 0 C 1179 0 U
1180 0 A 1192 0 A 1193 0 G 1203 0
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22 |
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1.15 |
1.15 |
16.5 |
-0.91 |
-0.64 |
13.5 |
79 |
2 |
1 |
0 |
1 |
0 |
1 |
0 |
C 136 0 U 137 0 C 139 0 C 260 0 A 261 0
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23 |
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1.13 |
1.13 |
18.2 |
-0.99 |
-0.58 |
15.2 |
79 |
2 |
1 |
0 |
1 |
0 |
1 |
0 |
C 136 0 U 137 0 C 139 0 A 261 0
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24 |
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1.44 |
1.66 |
15.3 |
1.01 |
0.15 |
5.7 |
84 |
0 |
2 |
0 |
5 |
0 |
1 |
0 |
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25 |
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1.26 |
1.34 |
16.0 |
0.71 |
-0.02 |
5.6 |
82 |
0 |
2 |
0 |
4 |
0 |
1 |
0 |
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26 |
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1.43 |
1.65 |
16.5 |
0.27 |
-0.14 |
13.5 |
78 |
0 |
2 |
0 |
4 |
1 |
1 |
0 |
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27 |
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1.26 |
1.35 |
17.2 |
-0.05 |
-0.30 |
13.5 |
75 |
0 |
2 |
0 |
3 |
1 |
1 |
0 |
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28 |
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1.08 |
2.16 |
17.2 |
1.97 |
0.46 |
7.5 |
85 |
0 |
2 |
0 |
7 |
1 |
0 |
0 |
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29 |
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1.04 |
1.14 |
25.0 |
-0.43 |
-0.03 |
13.0 |
85 |
1 |
3 |
2 |
4 |
2 |
0 |
0 |
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30 |
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1.16 |
1.16 |
16.9 |
-0.63 |
-0.82 |
6.4 |
92 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
A 485 0 A 486 0 G 487 0 U 488 0 G 504 0 C 505 0 G
506 0 G 512 0
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31 |
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1.20 |
1.20 |
18.2 |
-0.78 |
-0.78 |
3.0 |
94 |
0 |
0 |
3 |
0 |
0 |
1 |
0 |
A 1166 0 G 1167 0 A 1181 0 C 1182 0 C 1183 0 C
1184 0 A 1192 0
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program