PDBsum entry 1vq1 Go to PDB code:  Pore analysis for: 1vq1 calculated with MOLE 2.0 PDB id 1vq1 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.75 1.88 28.2 -0.34 -0.21 12.2 77 0 5 1 4 3 2 0  SAM 301 B 2 1.53 1.58 29.8 -2.21 -0.57 32.8 76 5 3 1 3 0 0 0   3 1.23 1.39 33.3 -0.56 -0.32 12.2 82 3 2 3 3 2 1 0  SAM 301 B 4 1.24 1.39 39.0 -1.40 -0.58 22.5 84 3 5 3 2 1 3 0  SAM 301 B 5 1.53 1.58 40.8 -1.89 -0.56 28.5 81 5 3 2 2 0 0 0   6 3.01 3.16 45.2 -2.89 -0.68 34.8 78 6 7 2 0 1 2 0   7 1.24 1.43 61.4 -1.26 -0.33 21.7 75 6 7 2 3 3 3 0  SAM 301 B 8 1.42 3.15 100.9 -1.93 -0.41 30.9 71 9 9 2 5 3 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.