PDBsum entry 1vlf

Pore analysis for: 1vlf calculated with

MOLE 2.0

PDB id

1vlf

Pores calculated on whole structure

Pores calculated excluding ligands

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12 pores, coloured by radius

13 pores, coloured by radius

13 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.42

2.85

28.8

-2.59

-0.80

31.8

81

5

4

1

1

0

0

0

2

3.18

3.55

42.8

-2.09

-0.40

28.1

76

7

8

1

3

2

1

0

3

1.26

1.26

46.1

-1.69

-0.54

18.3

73

6

3

2

2

2

2

0

4

1.91

1.98

72.4

-1.91

-0.43

27.9

82

9

10

3

5

3

1

0

5

2.13

2.89

76.3

-2.35

-0.82

29.2

80

9

13

1

1

0

0

0

6

2.24

2.57

79.9

-2.22

-0.55

27.3

78

13

12

2

4

2

1

0

7

2.10

2.82

98.8

-2.23

-0.70

25.6

81

14

12

4

3

1

0

0

8

2.58

2.39

100.8

-2.25

-0.73

27.0

83

11

10

5

1

1

0

0

9

2.77

2.77

107.5

-2.09

-0.63

26.2

79

12

12

3

4

2

1

0

10

2.11

2.87

113.1

-2.56

-0.61

34.1

80

13

14

5

3

1

1

0

11

2.88

3.11

144.3

-2.19

-0.62

30.5

77

12

20

4

3

2

2

0

12

1.08

1.84

215.3

-1.87

-0.57

21.3

82

21

16

9

6

5

0

0

CA 900 V

13

1.24

1.34

38.1

-0.32

-0.19

6.2

80

2

3

1

4

2

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.