PDBsum entry 1vkp Go to PDB code:  Tunnel analysis for: 1vkp calculated with MOLE 2.0 PDB id 1vkp Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 18 tunnels, coloured by tunnel radius 18 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.23 1.22 27.4 -0.47 -0.12 19.0 82 2 1 1 6 0 0 1  MSE 85 A EDO 908 A 2 1.88 1.91 27.9 -0.15 -0.35 10.5 80 2 1 2 3 1 0 1  MSE 85 A MSE 87 A EDO 908 A 3 1.20 1.21 27.9 -0.47 -0.15 18.6 80 2 1 1 5 0 0 1  MSE 85 A EDO 908 A 4 1.59 1.61 28.4 0.04 -0.28 9.8 82 2 1 2 4 1 0 1  MSE 85 A MSE 87 A EDO 908 A 5 1.86 1.90 34.1 0.57 -0.09 8.3 78 2 1 1 6 1 1 1  EDO 908 A MSE 85 B MSE 87 B 6 1.60 1.60 34.7 0.63 -0.09 7.6 78 2 1 1 6 1 1 1  EDO 908 A MSE 85 B MSE 87 B 7 1.16 1.16 23.2 0.09 -0.15 10.3 77 2 2 1 4 2 0 0  MSE 284 B 8 1.61 2.13 25.3 -0.50 -0.16 17.9 80 2 4 1 4 1 0 0  MSE 284 B 9 1.50 1.57 26.0 -0.32 -0.12 15.5 80 2 4 1 4 1 0 0  MSE 284 B 10 1.63 1.76 24.0 -0.91 -0.16 20.9 77 2 3 0 4 1 0 0  MSE 284 A 11 1.41 1.58 24.7 -0.74 -0.12 18.8 77 2 3 0 4 1 0 0  MSE 284 A 12 1.73 2.08 26.3 -1.50 -0.57 20.5 78 2 5 1 0 1 0 2  EDO 901 A EDO 903 A 13 1.49 1.57 33.4 -0.41 -0.13 13.8 76 2 2 2 4 3 0 1  MSE 15 A MPO 1000 A 14 1.47 1.90 34.7 -1.08 -0.23 16.8 79 2 3 2 3 2 2 1  MSE 15 A 15 1.23 1.35 37.1 -0.64 -0.18 12.9 81 1 2 2 5 2 2 1  MSE 15 B EDO 913 B 16 1.22 1.34 38.4 -0.19 -0.02 12.6 77 3 1 1 6 3 0 1  MSE 15 B 17 1.31 1.48 32.3 -0.06 -0.02 17.1 86 2 1 1 3 1 0 0   18 1.27 1.27 16.7 -0.21 -0.41 3.8 79 0 1 4 1 2 0 0  MG 801 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.