PDBsum entry 1vkj Go to PDB code:  Tunnel analysis for: 1vkj calculated with MOLE 2.0 PDB id 1vkj Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.88 18.5 -2.34 -0.40 34.4 74 2 5 0 0 2 0 0   2 1.12 1.90 20.2 -2.26 -0.57 31.1 77 2 5 0 0 2 0 0   3 1.09 1.94 20.4 -1.92 -0.15 32.0 75 2 5 0 2 2 0 0   4 1.10 1.86 22.0 -1.89 -0.37 28.8 77 2 5 0 2 2 0 0   5 1.13 2.05 30.1 -2.44 -0.38 35.8 75 4 5 0 0 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.