PDBsum entry 1vk6 Go to PDB code:  Tunnel analysis for: 1vk6 calculated with MOLE 2.0 PDB id 1vk6 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.66 1.72 17.0 0.22 0.46 11.9 70 3 0 0 2 2 1 1  MSE 201 A MPD 304 A 2 1.78 1.84 18.0 0.33 0.13 2.2 80 0 0 2 3 1 0 1  MSE 201 A 3 1.83 1.94 18.2 -0.48 -0.10 5.6 57 2 0 0 0 3 1 2  MSE 105 A MSE 114 A 4 1.63 1.69 27.1 -0.18 0.24 8.7 81 2 1 2 4 1 2 1  MSE 201 A MPD 304 A 5 1.40 1.41 30.4 -0.46 -0.08 7.4 81 3 0 2 5 1 1 1  MSE 201 A MPD 304 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.