PDBsum entry 1vk0 Go to PDB code:  Tunnel analysis for: 1vk0 calculated with MOLE 2.0 PDB id 1vk0 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.10 3.19 34.7 -1.03 0.01 20.3 78 4 3 3 5 4 0 0   2 1.20 3.12 47.7 -0.81 -0.36 18.1 79 4 6 2 6 3 0 0   3 1.21 2.85 32.5 -1.12 0.00 20.1 79 4 3 3 4 4 0 0   4 1.23 1.45 37.9 -0.67 -0.02 17.1 75 3 4 1 6 5 0 0   5 1.24 3.23 45.8 -1.11 -0.39 19.7 79 5 5 2 5 4 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.