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PDBsum entry 1vjj

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Top Page protein ligands metals Protein-protein interface(s) clefts links
Cleft analysis for: 1vjj PDB id
1vjj
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 6890.06 1.19 65.80 4 11.17 3 18.03 1 14 19 32 20 11 11 0 GDP 1104[B] (3 atoms)
2 5767.45 0.00 67.50 2 10.61 4 15.09 2 16 12 18 27 11 11 1  
3 5749.73 0.00 69.94 1 12.36 1 12.52 5 13 12 23 41 7 15 0 GDP 1104[B] (16 atoms)
4 4575.23 0.00 65.92 3 11.48 2 14.25 3 13 14 20 15 8 9 0 GDP 1004[A] (9 atoms)
5 3791.39 0.00 62.25 8 8.68 8 11.66 6 9 11 18 15 5 7 0  
6 3172.92 0.00 64.62 5 7.48 9 9.83 7 10 9 15 12 7 6 1  
7 3097.41 0.00 62.80 6 10.40 5 13.46 4 10 11 14 9 3 5 0  
8 1225.12 0.00 62.77 7 6.45 10 7.58 10 6 3 5 6 2 2 0  
9 1137.38 0.00 60.73 9 9.96 6 9.02 8 1 1 8 6 1 6 0  
10 958.50 0.00 59.06 10 8.70 7 8.47 9 2 2 8 5 0 5 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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