PDBsum entry 1vj5 Go to PDB code:  Tunnel analysis for: 1vj5 calculated with MOLE 2.0 PDB id 1vj5 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.14 2.32 18.3 0.90 0.77 13.8 79 2 1 1 4 2 0 0   2 1.93 2.78 20.3 0.18 0.33 4.0 76 0 1 2 3 4 2 0  PO4 783 A 3 1.81 2.71 22.4 0.58 0.56 3.5 77 0 1 3 4 4 1 0  PO4 783 A 4 1.35 3.69 25.3 0.05 0.20 12.5 74 1 3 1 6 4 0 0  PO4 783 A 5 1.88 4.44 21.1 1.31 0.85 7.1 66 2 0 0 6 5 0 0  CIU 781 A 6 1.69 3.53 32.0 0.66 0.83 5.4 67 1 1 2 8 7 0 0  CIU 781 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.