PDBsum entry 1vj3 Go to PDB code:  Tunnel analysis for: 1vj3 calculated with MOLE 2.0 PDB id 1vj3 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.42 1.42 29.1 0.79 0.18 5.0 83 0 1 2 5 4 1 0  NDP 207 A TAB 300 A 2 1.43 1.43 33.5 1.28 0.49 5.9 78 2 1 1 7 5 1 0  NDP 207 A TAB 300 A 3 1.43 1.43 33.9 0.96 0.43 7.7 78 2 1 0 7 5 1 0  NDP 207 A TAB 300 A 4 1.43 1.43 33.9 0.05 -0.07 6.5 80 1 2 1 5 4 0 0  NDP 207 A TAB 300 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.