PDBsum entry 1vhk Go to PDB code:  Tunnel analysis for: 1vhk calculated with MOLE 2.0 PDB id 1vhk Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.14 1.70 36.2 -0.19 -0.29 8.0 77 2 2 2 6 2 2 0   2 1.12 1.65 37.6 0.70 0.02 1.9 76 0 0 3 7 4 2 0   3 1.14 1.75 47.0 0.29 -0.22 5.6 80 0 2 3 10 2 3 0   4 1.25 2.63 16.0 0.59 0.06 8.7 69 1 1 1 3 1 0 1  MSE 164 A 5 1.28 1.54 17.3 0.48 0.04 10.0 72 2 1 1 3 1 0 1  MSE 164 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.