PDBsum entry 1vgg Go to PDB code:  Tunnel analysis for: 1vgg calculated with MOLE 2.0 PDB id 1vgg Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.16 24.3 -0.33 -0.40 6.5 82 2 2 2 7 1 0 1  MSE 133 D MSE 1 F 2 1.17 1.17 28.9 -0.94 -0.48 9.2 77 2 2 2 5 2 0 1  MSE 133 D 3 1.03 2.17 35.4 1.48 0.20 4.6 76 1 1 1 14 0 0 0  MSE 1 D MSE 133 E 4 1.12 1.12 25.6 0.31 -0.23 5.6 80 2 2 2 8 1 0 1  MSE 1 A MSE 133 B 5 1.11 1.11 25.9 -0.67 -0.45 8.3 77 2 2 2 5 2 0 1  MSE 133 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.