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PDBsum entry 1vfg
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Pore analysis for: 1vfg calculated with  MOLE 2.0
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PDB id
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1vfg
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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8 pores,
coloured by radius |
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10 pores,
coloured by radius
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10 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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3.48 |
3.48 |
31.1 |
-1.17 |
-0.11 |
24.3 |
76 |
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5 |
2 |
1 |
1 |
2 |
0 |
0 |
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APC 500 A G 1 C G 69 C G 70 C C 72 C
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2 |
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2.03 |
2.03 |
33.6 |
-0.46 |
-0.80 |
4.3 |
86 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
G 1 C G 2 C C 3 C C 4 C A 5 C G 7 C G 49 C G 50 C
C 51 C G 52 C G 53 C A 58 C U 59 C U 60 C C 61 C
C 62 C G 63 C C 64 C C 65 C
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3 |
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2.70 |
2.70 |
47.5 |
-0.47 |
-0.77 |
4.6 |
91 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
G 1 C C 3 C C 4 C A 5 C G 7 C G 49 C G 50 C C 51
C G 52 C G 53 C A 58 C U 59 C U 60 C C 61 C C 62
C G 63 C C 64 C C 65 C C 66 C C 67 C U 68 C G 69
C G 70 C
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4 |
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1.69 |
2.55 |
87.5 |
-2.81 |
-0.56 |
33.2 |
78 |
7 |
5 |
4 |
3 |
1 |
1 |
0 |
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5 |
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1.76 |
3.36 |
109.5 |
-2.74 |
-0.44 |
36.1 |
79 |
10 |
7 |
3 |
4 |
2 |
1 |
0 |
G 1 C G 2 C C 64 C
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6 |
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1.54 |
3.44 |
118.1 |
-2.71 |
-0.52 |
32.3 |
77 |
9 |
9 |
3 |
4 |
4 |
0 |
0 |
APC 500 A G 1 C G 2 C C 64 C C 71 C C 72 C
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7 |
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2.31 |
2.46 |
26.3 |
1.02 |
0.05 |
6.8 |
66 |
1 |
1 |
0 |
3 |
1 |
0 |
0 |
G 52 D G 53 D U 54 D U 55 D A 58 D U 60 D C 61 D
C 62 D G 63 D C 64 D C 65 D
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8 |
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1.87 |
2.19 |
27.0 |
1.30 |
0.38 |
6.5 |
72 |
2 |
0 |
0 |
6 |
1 |
0 |
0 |
U 55 D C 56 D G 57 D A 58 D U 60 D
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9 |
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1.63 |
1.90 |
34.4 |
0.48 |
-0.14 |
8.9 |
71 |
1 |
1 |
0 |
6 |
0 |
2 |
0 |
G 52 D G 53 D U 54 D U 55 D C 56 D C 61 D C 62 D
G 63 D C 64 D C 65 D
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10 |
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1.94 |
2.17 |
38.4 |
-0.91 |
-0.72 |
12.2 |
82 |
2 |
1 |
1 |
1 |
0 |
0 |
0 |
G 1 D C 3 D C 4 D A 5 D C 61 D C 62 D G 63 D C 64
D C 65 D C 66 D C 67 D U 68 D G 70 D
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program