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PDBsum entry 1vdn

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Tunnel analysis for: 1vdn calculated with MOLE 2.0 PDB id
1vdn
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 2.29 6.4 -1.45 -0.71 11.3 85 1 0 1 1 0 0 0  
2 1.62 8.0 -1.60 -0.78 12.2 78 1 0 1 0 0 1 0  
3 1.65 6.1 2.92 0.88 3.4 86 1 0 0 4 0 0 0  
4 1.68 7.4 3.16 0.96 1.8 89 1 0 0 6 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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