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PDBsum entry 1vdn

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Cleft analysis for: 1vdn PDB id
1vdn
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 1303.59 3.12 65.48 3 10.99 1 8.83 1 5 0 10 7 4 8 0 ACE 1[B], ALA 2[B], ALA 3[B], PR
O 4[B], ALA 5[B] (21 atoms)
2 417.23 0.00 60.05 7 3.77 6 5.73 5 1 2 4 3 3 7 1  
3 298.27 0.00 54.27 9 8.27 3 7.03 3 1 0 3 3 0 2 0  
4 210.09 0.00 58.51 8 4.53 5 0.00 7 1 2 1 1 1 2 0  
5 239.62 0.00 54.22 10 5.41 4 5.93 4 1 1 1 4 0 0 0  
6 199.55 0.00 63.42 5 8.75 2 8.60 2 2 1 1 0 1 3 0  
7 172.12 0.00 60.23 6 3.02 8 0.00 8 1 2 0 3 0 2 0  
8 103.78 0.00 63.49 4 1.32 10 5.41 6 1 1 0 2 0 2 0  
9 99.56 0.00 73.63 2 3.77 7 0.00 9 1 1 2 2 0 1 0  
10 97.45 0.00 76.33 1 2.33 9 0.00 10 3 1 0 2 1 0 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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