PDBsum entry 1vdd Go to PDB code:  Pore analysis for: 1vdd calculated with MOLE 2.0 PDB id 1vdd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.16 50.3 -0.81 -0.39 11.9 85 2 4 2 5 2 1 0   2 1.46 2.33 97.1 -2.15 -0.21 23.6 81 4 7 2 2 2 2 0   3 1.19 1.86 124.6 -1.31 -0.23 16.8 85 4 5 3 6 3 2 0   4 1.18 1.18 145.1 -1.69 -0.43 19.9 80 6 8 3 1 3 1 0   5 1.02 2.54 32.0 -3.29 -0.61 41.0 78 5 3 1 0 1 0 0  IMD 2025 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.