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PDBsum entry 1vcj

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Tunnel analysis for: 1vcj calculated with MOLE 2.0 PDB id
1vcj
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.30 14.3 -2.35 -0.38 32.1 80 5 1 0 1 1 0 0  1 IBA A
2 1.39 9.7 -1.64 -0.63 18.0 91 3 0 1 0 0 0 0  
3 1.38 17.5 -1.96 -0.66 19.6 90 3 1 1 0 0 0 0  
4 1.40 8.2 0.06 0.35 9.9 81 0 1 1 2 1 1 0  
5 1.63 7.2 1.52 0.37 5.2 80 1 0 0 2 0 2 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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