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PDBsum entry 1vbr
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Tunnel analysis for: 1vbr calculated with  MOLE 2.0
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PDB id
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1vbr
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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7 tunnels,
coloured by tunnel radius |
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7 tunnels,
coloured by
tunnel radius
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7 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.52 |
3.28 |
17.6 |
-0.78 |
-0.05 |
13.3 |
77 |
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3 |
2 |
1 |
0 |
4 |
0 |
0 |
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2 |
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1.27 |
1.43 |
17.7 |
-2.09 |
-0.11 |
28.7 |
74 |
3 |
2 |
1 |
1 |
2 |
0 |
0 |
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3 |
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1.46 |
2.81 |
18.2 |
-1.00 |
-0.17 |
13.7 |
80 |
3 |
2 |
2 |
0 |
4 |
0 |
0 |
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4 |
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1.53 |
1.94 |
18.9 |
-0.90 |
-0.29 |
10.9 |
80 |
3 |
0 |
2 |
0 |
4 |
0 |
0 |
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5 |
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1.26 |
1.42 |
19.9 |
-2.47 |
-0.14 |
38.0 |
73 |
3 |
6 |
0 |
1 |
2 |
0 |
0 |
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6 |
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1.19 |
2.64 |
16.6 |
2.15 |
0.60 |
2.8 |
79 |
1 |
0 |
0 |
6 |
1 |
0 |
0 |
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7 |
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1.19 |
2.63 |
18.1 |
1.33 |
0.43 |
5.6 |
81 |
1 |
0 |
1 |
6 |
1 |
1 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program