PDBsum entry 1vb9 Go to PDB code:  Pore analysis for: 1vb9 calculated with MOLE 2.0 PDB id 1vb9 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   13 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.84 2.02 35.1 -1.78 -0.28 23.4 81 4 4 1 4 3 1 0  GLC 1 C GLC 2 C GLC 4 C GLC 5 C GLC 6 C 2 1.50 1.60 48.8 -1.36 -0.10 24.6 70 9 3 0 1 8 0 0   3 1.51 1.66 49.2 -0.88 0.10 25.0 67 7 6 0 3 9 0 0   4 2.60 2.76 51.7 -1.94 -0.58 25.3 87 9 5 5 4 0 1 0   5 1.68 2.11 52.8 -1.71 -0.20 28.1 75 11 5 1 3 6 0 0   6 1.56 1.68 56.8 -2.02 -0.33 30.4 79 10 6 1 5 4 0 0   7 1.52 1.67 59.6 -1.46 -0.34 26.8 80 8 7 2 6 3 1 0   8 1.51 1.67 60.0 -0.71 -0.13 23.6 73 6 8 1 5 6 1 0   9 1.75 1.96 63.7 -1.44 -0.37 25.7 79 9 7 2 5 3 1 0  GLC 1 C 10 1.59 1.64 66.0 -1.20 -0.14 26.0 73 8 7 1 5 7 1 0   11 1.61 1.73 87.1 -1.54 -0.41 24.3 82 13 10 6 6 3 1 0   12 1.54 1.59 90.3 -2.02 -0.45 27.5 81 14 8 5 6 4 1 0   13 1.68 2.14 90.9 -1.50 -0.27 23.7 80 15 8 6 6 6 1 0   14 1.65 2.02 100.2 -1.36 -0.37 23.0 83 13 10 7 8 3 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.