PDBsum entry 1vao Go to PDB code:  Tunnel analysis for: 1vao calculated with MOLE 2.0 PDB id 1vao Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.38 2.70 48.4 -1.26 -0.27 15.2 76 6 2 4 5 3 1 0  FAD 600 A CL 602 A 2 1.38 2.70 48.4 -1.26 -0.27 15.2 76 6 2 4 5 3 1 0  FAD 600 B CL 602 B 3 1.31 1.64 15.4 -1.38 -0.07 27.9 82 3 2 0 2 0 1 0   4 1.31 1.64 15.4 -1.38 -0.07 27.9 82 3 2 0 2 0 1 0   5 1.15 1.21 25.2 1.20 0.21 5.6 88 1 2 1 8 1 0 0   6 1.11 1.19 24.9 1.15 0.18 4.5 88 1 2 1 8 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.