spacer
spacer

PDBsum entry 1vai

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) links
Tunnel analysis for: 1vai calculated with MOLE 2.0 PDB id
1vai
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
9 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.47 8.8 -1.46 0.05 18.8 83 2 0 1 2 1 0 0  
2 1.90 5.7 -0.48 -0.69 2.3 99 0 0 1 2 0 0 0  1 ACE C
3 1.58 7.6 -0.75 0.39 16.8 85 2 0 0 3 1 0 0  
4 1.33 11.5 -0.20 0.55 6.1 79 1 0 1 1 2 0 0  
5 1.47 11.8 -1.48 0.03 17.7 83 2 0 0 2 1 0 0  
6 1.87 8.6 0.13 -0.19 4.9 85 1 0 1 2 0 2 0  
7 2.03 8.8 0.34 -0.09 4.3 86 1 0 0 3 0 2 0  
8 2.08 4.4 -0.56 -0.26 12.4 76 1 1 1 1 0 0 0  
9 1.59 1.9 -0.24 -0.46 2.4 87 0 0 0 2 0 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer