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PDBsum entry 1vai

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Top Page protein ligands Protein-protein interface(s) clefts links
Cleft analysis for: 1vai PDB id
1vai
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 2546.02 1.96 59.78 7 10.47 1 13.86 1 8 5 9 9 3 5 0  
2 1298.11 0.00 67.02 3 8.94 2 9.81 3 5 0 9 6 6 3 0 ACE 1[C], ALA 2[C], ALA 3[C], PR
O 4[C], ALA 5[C] (21 atoms)
3 1189.69 0.00 65.74 4 8.49 3 9.23 4 3 0 9 6 5 3 0  
4 667.83 0.00 57.60 9 7.31 5 8.24 6 4 2 1 2 2 2 0  
5 473.34 0.00 56.44 10 4.45 10 5.95 9 2 3 2 4 0 2 0  
6 303.33 0.00 70.86 1 5.14 9 8.41 5 2 1 3 3 0 2 0  
7 291.94 0.00 57.67 8 7.67 4 7.32 7 2 2 0 2 0 2 0  
8 270.00 0.00 63.81 6 6.31 7 6.29 8 0 1 3 2 1 2 0  
9 340.45 0.00 69.15 2 6.71 6 10.21 2 2 1 4 3 1 2 0  
10 327.38 0.00 65.00 5 5.49 8 0.00 10 4 0 2 5 0 3 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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