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PDBsum entry 1v54

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Top Page protein ligands metals Protein-protein interface(s) links
Protein chain B    -    representing identical chain: O PDB id
1v54
Protein chain B highlighted
(click to view)
 
Jmol
Motifs
Secondary structure
Wiring diagram
Residue conservation
ProMotif
3 sheets
4 beta hairpins
1 beta bulge
10 strands
12 beta turns
2 gamma turns
Chains 514 a.a.
Chains 227 a.a.
Chains 259 a.a.
Chains 144 a.a.
Chains 105 a.a.
Chains 98 a.a.
Chains 84 a.a.
Chains 79 a.a.
Chains 73 a.a.
Chains 58 a.a.
Chains 49 a.a.
Chains 46 a.a.
Chains 43 a.a.
  
Chain & (227 residues)

UniProt code: P68530 (COX2_BOVIN)   [Pfam]

structural classification (2 domains) :
Domain Links CATH no.   Class Architecture
1 1.10.287.90 = Mainly Alpha Orthogonal Bundle
2 2.60.40.420 = Mainly Beta Sandwich

Key:  
Sec. struc: Helices labelled H1, H2, ... and strands by their sheets A, B, ...
  Helix Strand  
Motifs:   
    beta turn     gamma turn     beta hairpin
Residue contacts:   
    to ligand     to metal
PDB SITE records:   
 AC1  AC2  AC3  AC4  AC5
 AC6  AC7  AC8  AC9  BC1
 BC2  BC3  BC4  BC5  BC6
 BC7  BC8  BC9  CC1  CC2
 CC3  CC4  CC5  CC6  CC7
 CC8  CC9  DC1  DC2  DC3
 DC4  DC5  DC6  DC7  DC8
 DC9  EC1  EC2  EC3  EC4
 EC5  EC6  EC7  EC8  EC9
 FC1  FC2  FC3  FC4  FC5
 FC6  FC7

Jmol
RasMol

FASTA
file
Domain 1
Topology diagram


Hera


Domain 2
Topology diagram


Hera


  Analysis of sequence's residue conservation
  Related protein sequences in the PDB
  
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