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Ligand clusters for UniProt code P68530

Ligand clusters for P68530: Cytochrome c oxidase subunit 2 OS=Bos taurus GN=MT-CO2 PE=1 SV=1

Top 6 (of 8) ligand clusters
Cluster 1.
5 ligand types
27 ligands
Cluster 2.
6 ligand types
59 ligands
Cluster 3.
1 ligand type
20 ligands
Cluster 4.
1 ligand type
20 ligands
Cluster 5.
1 ligand type
20 ligands
Cluster 6.
1 ligand type
27 ligands
Representative protein: 1occB  
 

Structures

PDB   Schematic diagram
1occB    
2ybbM    
1oczB    
3asnB    
3asoB    
 more ...

 

 Cluster 1 contains 5 ligand types

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Ligand Description


 
1. Ligand: HEA × 22
Heme-A
PDB codes: 1occ(B), 1ocr(B), 1ocz(B), 1v54(B), 1v55(B), 2dyr(B), 2dys(B), 2eij(B), 2eik(B), 2eil(B), 2eim(B), 2ein(B), 2y69(B), 2ybb(M), 2zxw(B), 3abk(B), 3abl(B), 3abm(B), 3ag2(B), 3asn(B), 3aso(B), 3wg7(B).


 
2. Ligand: HEA-CMO × 2
HEA=Heme-A, CMO=Carbon monoxide.
PDB codes: 1oco(B), 3ag1(B).


 
3. Ligand: HEA-CYN × 1
HEA=Heme-A, CYN=Cyanide ion.
PDB code: 3ag4(B).


 
4. Ligand: HEA-PER × 1
HEA=Heme-A, PER=Peroxide ion.
PDB code: 2occ(B).


 
5. Ligand: HEA-_NO × 1
HEA=Heme-A, NO=Nitric oxide.
PDB code: 3ag3(B).

 

 Cluster 2 contains 6 ligand types

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Ligand Description


 
1. Ligand: CHD × 9
Cholic acid
PDB codes: 1v54(B), 1v55(B), 2dyr(B), 2dys(B), 2eij(B), 2eik(B), 2eil(B), 2eim(B), 2ein(B).


 
2. Ligand: PEK × 9
(1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-1- [(Stearoyloxy)methyl]ethyl (5e,8e,11e,14e)-
Icosa-5,8, 11,14-Tetraenoate
PDB codes: 1v54(B), 1v55(B), 2dyr(B), 2dys(B), 2eij(B), 2eik(B), 2eil(B), 2eim(B), 2ein(B).


 
3. Ligand: CDL × 9
Cardiolipin
PDB codes: 1v54(B), 1v55(B), 2dyr(B), 2dys(B), 2eij(B), 2eik(B), 2eil(B), 2eim(B), 2ein(B).


 
4. Ligand: CHD × 12
Cholic acid
PDB codes: 2y69(B), 2zxw(B), 3abk(B), 3abl(B), 3abm(B), 3ag1(B), 3ag2(B), 3ag3(B), 3ag4(B), 3asn(B), 3aso(B), 3wg7(B).


 
5. Ligand: CDL × 11
Cardiolipin
PDB codes: 2zxw(B), 3abk(B), 3abl(B), 3abm(B), 3ag1(B), 3ag2(B), 3ag3(B), 3ag4(B), 3asn(B), 3aso(B), 3wg7(B).


 
6. Ligand: PEK × 9
(1s)-2-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-1- [(Stearoyloxy)methyl]ethyl (5e,8e,11e,14e)-
Icosa-5,8, 11,14-Tetraenoate
PDB codes: 2zxw(B), 3abk(B), 3abl(B), 3abm(B), 3ag1(B), 3ag2(B), 3ag4(B), 3asn(B), 3aso(B).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: TGL × 20
Tristearoylglycerol
PDB codes: 1v54(B), 1v55(B), 2dyr(B), 2dys(B), 2eij(B), 2eik(B), 2eil(B), 2eim(B), 2ein(B), 2zxw(B), 3abk(B), 3abl(B), 3abm(B), 3ag1(B), 3ag2(B), 3ag3(B), 3ag4(B), 3asn(B), 3aso(B), 3wg7(B).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: TGL × 20
Tristearoylglycerol
PDB codes: 1v54(B), 1v55(B), 2dyr(B), 2dys(B), 2eij(B), 2eik(B), 2eil(B), 2eim(B), 2ein(B), 2zxw(B), 3abk(B), 3abl(B), 3abm(B), 3ag1(B), 3ag2(B), 3ag3(B), 3ag4(B), 3asn(B), 3aso(B), 3wg7(B).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: PSC × 20
(7r,17e,20e)-4-Hydroxy-N,N,N-Trimethyl-9-Oxo-7- [(Palmitoyloxy)methyl]-3,5,8-Trioxa-4-
Phosphahexacosa- 17,20-Dien-1-Aminium 4-Oxide
PDB codes: 1v54(B), 1v55(B), 2dyr(B), 2dys(B), 2eij(B), 2eik(B), 2eil(B), 2eim(B), 2ein(B), 2zxw(B), 3abk(B), 3abl(B), 3abm(B), 3ag1(B), 3ag2(B), 3ag3(B), 3ag4(B), 3asn(B), 3aso(B), 3wg7(B).

 

 Cluster 6 contains 1 ligand type

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Ligand Description

_Mg
 
1. Metal: _MG × 27
PDB codes: 1occ(B), 1oco(B), 1ocr(B), 1ocz(B), 1v54(B), 1v55(B), 2dyr(B), 2dys(B), 2eij(B), 2eik(B), 2eil(B), 2eim(B), 2ein(B), 2occ(B), 2y69(B), 2ybb(M), 2zxw(B), 3abk(B), 3abl(B), 3abm(B), 3ag1(B), 3ag2(B), 3ag3(B), 3ag4(B), 3asn(B), 3aso(B), 3wg7(B).

 

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