spacer
spacer

PDBsum entry 1v4v

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 1v4v calculated with MOLE 2.0 PDB id
1v4v
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
2 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.85 2.07 26.6 -1.30 -0.54 13.3 80 3 2 2 3 0 1 0  MSE 66 B
2 1.41 1.56 27.7 -2.00 -0.44 22.0 70 4 5 1 1 2 4 0  
3 1.05 2.21 69.2 -0.42 -0.45 10.2 78 5 1 1 7 0 1 0  MSE 341 B
4 1.78 3.05 46.9 -1.90 -0.44 18.6 83 6 2 3 2 1 1 0  MSE 66 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer