spacer
spacer

PDBsum entry 1v2q

Go to PDB code: 
Top Page protein ligands metals tunnels links
Tunnel analysis for: 1v2q calculated with MOLE 2.0 PDB id
1v2q
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
2 tunnels, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.22 1.62 20.8 -0.18 -0.54 7.2 78 0 1 1 3 0 0 1  
2 1.13 1.14 22.2 0.12 -0.43 6.6 75 0 1 1 4 0 0 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer